HOST -PATHOGEN INTERACTOMES
Host-pathogen Interactome Databases |
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Host pathogen interactomes: PolygenicPathways |
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Wikipedia links | Interactomes | KEGG pathways |
Interactome | KEGG pathways | ||
Borrelia Burgdorferi | Interactome | KEGG pathways | |
Candida albicans | Interactome | KEGG pathways | |
Chlamydia Pneumoniae | Interactome | ||
Cryptococcus Neoformans | Interactome | KEGG pathways | |
Ebola virus | Interactome | KEGG pathways | |
Epstein-Barr virus | KEGG pathways | ||
Helicobacter pylori | Interactome | KEGG pathways | |
Hepatitis C virus | Interactome | KEGG pathways | |
Herpes simplex (HSV-1) VIPR | Interactome | KEGG pathways | |
HERV-W | Interactome | KEGG pathways | |
HIV-1 | KEGG pathways | ||
Human cytomegalovirus | Interactome | KEGG pathways | |
Influenza A virus | Interactome | KEGG pathways | |
Porphyromonas Gingivalis | Interactome | KEGG pathways | |
Toxoplasma Gondii | Interactome | KEGG pathways | |
Trypanosoma Cruzi | Interactome | KEGG pathways | |
DenHunt Dengue virus interactome | |||
Interactome Databases | References | ||
HCVPro | HCVpro: hepatitis C virus protein interaction database Kwofie et al, 2011. | ||
Virus Human Interactome Network Map VirHostome database From the Dana Farber Cancer Institute and Harvard medical school. | "Host interactome and transcriptome networks induced by individual gene products encoded by members of four functionally related, yet biologically distinct, families of DNA tumor viruses: several polyomaviruses (PyV), simian virus 40 (SV40) in particular; six classes of human papillomaviruses (HPV), high-risk (for carcinogenesis) mucosal HPV16 and HPV18, low risk mucosal HPV6b and HPV11, and cutaneous HPV5 and HPV8; Epstein-Barr Virus (EBV); and Adenovirus 5 (Ad5)." | ||
VirHostNet University of Lyon | VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks Navratil et al, 2009. | ||
VirusMentha | VirusMentha: a new resource for virus-host protein interactions Calderone et al, 2015 | ||
VirusMint University of Rome (stored at Harmonizome ) | VirusMINT: a viral protein interaction database.Chatr-aryamontri et al, 2009 | ||
VIPR | Virus pathogen Resource : ViPR: an open bioinformatics database and analysis resource for virology research. Pickett et al, 2012 | ||
ViralZone | ViralZone is a SIB Swiss Institute of Bioinformatics web-resource for all viral genus and families, providing general molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives an easy access to UniProtKB/Swiss-Prot viral protein entries. | ||
Pathogen interaction Gateway | Protein/Protein interactions (PPI's ) from a wide range of bacteria and viruses and numerous invertebrate and vertebrate hosts from The Pathogen Portal developed and maintained by the CyberInfrastructure Division at the Virginia Bioinformatics Institute at Virginia Tech. | ||
Vita
Department of Biological Science and Technology, Institute of Bioinformatics National Chiao Tung University,Hsinchu, Taiwan |
ViTa is a database which collects virus data
from miRBase and ICTV, VirGne, VBRC.., etc, including known miRNAs on virus
and supporting predicted host miRNA targets by miRanda and TargetScan. ViTa
also provide effective annotations, including human miRNA expression, virus infected tissues, annotation of virus and comparisons. Additionally, a multiple functions and graphical web interface are designed and implemented to help users to investigate the microRNA roles in viral existence. ViTa is developed by Bidlab(2005) |
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FluMap | A Comprehensive map of Influenza A virus replication
cycle Matsuoka et al, .BMC
Systems Biology 2013, 7:97 |
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NCBI HIV-1, Human Protein Interaction Database |
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Omics tools | Host pathogen interactions | ||
EHFPI | Database of Essential Host Factors for Pathogenic Infection Liu et al, 2015 | ||
vhfRNAi: | vhfRNAi: a web-platform for analysis of host genes involved in viral infections discovered by genome wide RNAi screens Thakur et al, 2017 | ||
Publications
Susceptibility genes are enriched in those of the herpes simplex (HSV-1) / host interactome in psychiatric and neurological disorders. Pathogens and disease 2013
Toxoplasmosis and polygenic disease susceptibility genes: Extensive T.Gondii
host/pathogen interactome enrichment
in nine psychiatric or neurological disorders J.
Pathogens, 2013
Genetic, Transcriptome, Proteomic, and Epidemiological Evidence for Blood-Brain Barrier Disruption and Polymicrobial Brain Invasion as Determinant Factors in Alzheimer’s Disease Journal of Alzheimer's disease reports 2017
The Porphyromonas gingivalis/host interactome shows enrichment in GWASdb genes related to Alzheimer’s disease, diabetes and cardiovascular diseases Carter, France, Crean & Singhrao, 2017