Alignments

Select All Get selected sequences

>ref|XP_002369222.1|  hypothetical protein TGME49_085840 [Toxoplasma gondii ME49]
Length=571

 GENE ID: 7898137 TGME49_085840 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 35.8 bits (77),  Expect = 0.066, Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 60/222 (27%), Gaps = 42/222 (18%)

Query  85   TLVMPWVVYLEVV-GEWKFS-RIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLY  142
             L  P V  L V  G   FS R  C  F                    +    V +P+L+
Sbjct  97   SLAFPSVSSLPVGDGGSDFSLRLAC-AFSSTPGRPASPGEAAHPGDKAEKEKPVDLPLLF  155

Query  143  NTRYS--SKRRVTVMISIVWVLSFTISCPLLFGLNNADQNECIIANPA------------  188
            +      S   V      +  L    S PL      AD N  +    A            
Sbjct  156  DGGEERLSPQQVAEKEQLIKELTQRLSGPL------ADSNGNVPTGAARPIAIEVDGPTH  209

Query  189  FVVYSSIVSFYVPFIVTLLVYIKIYIVLR-----RRRKRVNTKRSSRAFRAHLRAPLKGN  243
            F   S     Y      LL     Y VL       RR R    R        +R  L   
Sbjct  210  FYANSTRYTAYTKLKHRLLTRMG-YKVLHVPYFEWRRLRGQKERE-----EYMRRKLMEE  263

Query  244  CT---HPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEME  282
             T    PED K     MK            E ARRA  L  E
Sbjct  264  PTEWLDPEDEKFYNERMKV-----LKQQYEEEARRAAGLGPE  300


 Score = 20.6 bits (41),  Expect =  2930, Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 30/104 (28%), Gaps = 11/104 (10%)

Query  317  STPDSPAKPEKNGHAKDHPKIAKIFEIQTMPNGKTRTSLKTMSRRKLSQQKE--KKATQM  374
            STP  PA P    H  D     K  +   + +G        +S     +  +  K  TQ 
Sbjct  125  STPGRPASPGEAAHPGDKAEKEKPVDLPLLFDG----GEERLSPQQVAEKEQLIKELTQR  180

Query  375  LAIVLGVFIICWLPFFITHILNIHCDCNIP----PVLYSAFTWL  414
            L   L        P        I  D           Y A+T L
Sbjct  181  LSGPLADS-NGNVPTGAARPIAIEVDGPTHFYANSTRYTAYTKL  223


>ref|XP_002371627.1|  hypothetical protein TGME49_076210 [Toxoplasma gondii ME49]
Length=387

 GENE ID: 7893747 TGME49_076210 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 31.2 bits (66),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 38/118 (32%), Gaps = 17/118 (14%)

Query  224  NTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSF--PVNRRRVEAARRAQELEM  281
            +T R   A R HL   LK N   P     C V    + S   P N    + A    E   
Sbjct  159  DTGRRAEALRSHL-ESLKANGRLP---LQCNVDRDLDWSLMNPLNEWWLQFADWELENAE  214

Query  282  EMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHGLHSTP-----DSPAKPEKNGHAKDH  334
             +LSS        Y P    H  LT  D  +  L          S A  E   +  D+
Sbjct  215  KLLSS------RWYEPHEEQHRRLTVDDHAQETLRASSSSQGLASAAGEENTAQLRDQ  266


 Score = 19.3 bits (38),  Expect =  6280, Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 0/18 (0%)

Query  233  RAHLRAPLKGNCTHPEDM  250
            R  L   LK   TH +DM
Sbjct  284  RDKLQMALKDYSTHMQDM  301


>ref|YP_161341.1|  hypothetical protein BGP056 [Borrelia garinii PBi]
Length=140

 GENE ID: 3189894 BGP056 | hypothetical protein [Borrelia garinii PBi]
(10 or fewer PubMed links)

 Score = 30.8 bits (65),  Expect = 2.2, Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 8/25 (32%)

Query  19  SRPFN------GSDGKADRPHYNYY  37
            R FN      G DGK DR   NYY
Sbjct  41  TRSFNEQAKGLGNDGKGDRS--NYY  63


>ref|ZP_03773474.1|  conserved hypothetical protein [Borrelia sp. SV1]
Length=140

 Score = 30.8 bits (65),  Expect = 2.5, Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 8/25 (32%)

Query  19  SRPFN------GSDGKADRPHYNYY  37
            R FN      G DGK DR   NYY
Sbjct  41  TRSFNEQAKGLGNDGKGDRS--NYY  63


>ref|YP_002640309.1|  hypothetical protein BVAVS116_V0003 [Borrelia valaisiana VS116]
Length=116

 GENE ID: 7557345 BVAVS116_V0003 | hypothetical protein
[Borrelia valaisiana VS116]

 Score = 30.3 bits (64),  Expect = 3.8, Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 8/25 (32%)

Query  19  SRPFN------GSDGKADRPHYNYY  37
            R FN      G DGK DR   NYY
Sbjct  17  TRSFNEQAKGLGNDGKDDRS--NYY  39


>ref|XP_002367612.1|  hypothetical protein TGME49_003300 [Toxoplasma gondii ME49]
Length=1330

 GENE ID: 7894056 TGME49_003300 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 29.9 bits (63),  Expect = 4.5, Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 3/22 (13%)

Query  336   KIA--KIFEIQTMPNGKTRTSL  355
              IA  KIFE   M NGKT  SL
Sbjct  1065  RIANIKIFEFD-MLNGKTPSSL  1085


 Score = 18.5 bits (36),  Expect = 11101, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  100   WKFSR  104
             WK+SR
Sbjct  1060  WKYSR  1064


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 7/20 (35%), Gaps = 13/20 (65%)

Query  57    MAVSREKALQTTTNYLIVSL  76
             MAV             IVSL
Sbjct  1043  MAV-------------IVSL  1049


>ref|XP_002370308.1|  patatin-like phospholipase domain-containing protein [Toxoplasma 
gondii ME49]
Length=2579

 GENE ID: 7894129 TGME49_105140 | patatin-like phospholipase domain-containing
protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 29.9 bits (63),  Expect = 4.8, Method: Composition-based stats.
 Identities = 9/12 (75%), Positives = 10/12 (83%), Gaps = 0/12 (0%)

Query  267  RRRVEAARRAQE  278
            RRR EA RRA+E
Sbjct  154  RRRLEAKRRAEE  165


 Score = 18.5 bits (36),  Expect = 11307, Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 35/65 (53%)

Query  149   KR--RVTV--------M----ISIVWVLSFTISCPLLFGLNNADQNECIIANPAFVVYSS  194
             KR  RVTV        M    +S     SF         L   D  +C IA       S 
Sbjct  1469  KRPGRVTVTYTHVFPYMQGEFVS-----SF---------LGKSDMIDCLIA-------SC  1507

Query  195   IVSFY  199
              + FY
Sbjct  1508  NIPFY  1512


 Score = 17.6 bits (34),  Expect = 21910, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 12/23 (52%)

Query  268  RRVEAARRAQELEMEMLSSTSPP  290
            RR    RR         SST PP
Sbjct  234  RR---TRR---------SSTFPP  244


 Score = 17.2 bits (33),  Expect = 31932, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 4/13 (30%)

Query  225   TKRSSRAFR--AH  235
             T R SR  R  AH
Sbjct  2490  TRRASR--RNSAH  2500


 Score = 16.8 bits (32),  Expect = 37330, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 4/10 (40%)

Query  223  VNTKRSSRAF  232
            VN    SRAF
Sbjct  269  VN----SRAF  274


 Score = 16.8 bits (32),  Expect = 44860, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 6/12 (50%), Gaps = 2/12 (16%)

Query  220  RKRVNTKRSSRA  231
            R R   KR  RA
Sbjct  154  RRRLEAKR--RA  163


 Score = 16.8 bits (32),  Expect = 45274, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  268   RRVEAARR  275
             RRV   RR
Sbjct  1087  RRVALPRR  1094


 Score = 15.9 bits (30),  Expect = 79295, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  13    LERQNW  18
             L R NW
Sbjct  1019  LGRDNW  1024


 Score = 15.5 bits (29),  Expect = 92700, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 4/11 (36%)

Query  284  LSSTSPPERTR  294
            LS    PER R
Sbjct  405  LS----PERPR  411


>ref|ZP_03672572.1|  phosphatidyltransferase [Borrelia valaisiana VS116]
Length=234

 Score = 29.9 bits (63),  Expect = 4.8, Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query  108  DIFVTLDVMMCTASILNLCAISIDRYTA-VAMPMLYNTRYSSKRRVTVMISIVWVLSFTI  166
            ++FV L++        NL  ISI   T  + M   Y       R +T  I I+  L F +
Sbjct  136  NVFVILNIIFKIEQTTNLIMISICIITSFIPMKFIYPSKTKELRKITLPITIISCLIFIV  195

Query  167  SCPLLFGLNNADQNECIIANPAFVVYSS  194
            S  L   L         IA    + Y  
Sbjct  196  SIFL--ELSTTALK---IAKTVLILYFT  218


>ref|ZP_03675076.1|  conserved hypothetical integral membrane protein [Borrelia spielmanii 
A14S]
Length=457

 Score = 29.5 bits (62),  Expect = 6.3, Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 37/124 (29%), Gaps = 19/124 (15%)

Query  169  PLLFGLNNADQNECIIANPAFVV-----------YSSIVSFYVPFIVT---LLVYIKIYI  214
             LL  L  AD N CI                   +  I S ++ FI+    L V I    
Sbjct  320  QLLLALASADKN-CIFSHGGITLSLLLATYMWSGFDKIMSIFIGFIIIKEGLNVIINNAN  378

Query  215  VLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVI---MKSNGSFPVNRRRVE  271
             L      ++ KRS       L    K    H +  KL   I   + S   F       E
Sbjct  379  NLLSKQN-IDLKRSVKDTLKNLHTNFKTLNFHNQGNKLVLYIKINLNSENDFQSFINKTE  437

Query  272  AARR  275
              R 
Sbjct  438  NIRK  441


>ref|XP_002371346.1|  GTPase regulator, putative [Toxoplasma gondii ME49]
Length=1941

 GENE ID: 7898554 TGME49_017790 | GTPase regulator, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 29.5 bits (62),  Expect = 6.6, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 9/10 (90%), Gaps = 0/10 (0%)

Query  266  NRRRVEAARR  275
            +R RVEAARR
Sbjct  403  DRQRVEAARR  412


 Score = 22.3 bits (45),  Expect =   824, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 7/8 (87%), Gaps = 0/8 (0%)

Query  271   EAARRAQE  278
             EAARR +E
Sbjct  1894  EAARRSHE  1901


 Score = 20.6 bits (41),  Expect =  2552, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  216  LRRRR  220
            LRRRR
Sbjct  567  LRRRR  571


 Score = 19.7 bits (39),  Expect =  4724, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  266   NRRRVEA  272
             NR R+EA
Sbjct  1624  NRQRIEA  1630


 Score = 18.9 bits (37),  Expect =  9761, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 5/20 (25%)

Query  267  RRRVEAARR-AQELEMEMLS  285
            R R++  RR A EL    LS
Sbjct  514  RKRIQLSRRPASEL----LS  529


 Score = 18.5 bits (36),  Expect = 13340, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  274   RRAQELE  280
             RR +ELE
Sbjct  1410  RRMEELE  1416


 Score = 17.6 bits (34),  Expect = 19622, Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 10/30 (33%)

Query  266  NRRRVEAA----RRAQELEM----EMLSST  287
             RR  EAA     R Q LE     EM  ST
Sbjct  671  HRRMQEAAYKEKKRLQRLERKAPDEM--ST  698


 Score = 17.2 bits (33),  Expect = 26572, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  369  KKATQM  374
            KKA QM
Sbjct  630  KKAEQM  635


 Score = 16.8 bits (32),  Expect = 40922, Method: Composition-based stats.
 Identities = 4/12 (33%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  365   QQKEKKATQMLA  376
             QQ +    +M+A
Sbjct  1830  QQTQRREAEMMA  1841


 Score = 15.9 bits (30),  Expect = 70368, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  267  RRRVEAARR  275
            R R E  RR
Sbjct  142  RKRMEKQRR  150


 Score = 15.5 bits (29),  Expect = 89355, Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 14/51 (27%), Gaps = 32/51 (62%)

Query  264   PVNRRRVEA-------------------ARRAQELEMEMLSSTSP---PER  292
             PVN     A                   ARRA     E LS       PER
Sbjct  1778  PVN-----AFLEEERERQRREKETAEFDARRA-----ERLSAANALRLPER  1818


 Score = 15.5 bits (29),  Expect = 99770, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  274  RRAQEL  279
            RR Q+L
Sbjct  394  RRMQQL  399


>ref|XP_002372053.1|  grb10 interacting GYF protein, putative [Toxoplasma gondii ME49]
Length=2350

 GENE ID: 7898641 TGME49_098610 | grb10 interacting GYF protein, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 29.1 bits (61),  Expect = 7.3, Method: Composition-based stats.
 Identities = 7/8 (87%), Positives = 8/8 (100%), Gaps = 0/8 (0%)

Query  277   QELEMEML  284
             Q+LEMEML
Sbjct  1557  QQLEMEML  1564


 Score = 18.0 bits (35),  Expect = 15172, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 2/12 (16%)

Query  90    WVVYLEVVGEWK  101
             W  Y E V EWK
Sbjct  2181  W--YKEQVEEWK  2190


 Score = 17.2 bits (33),  Expect = 27821, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 7/12 (58%), Gaps = 3/12 (25%)

Query  270   VE---AARRAQE  278
             VE   A R AQ+
Sbjct  1833  VEPQTASRKAQQ  1844


 Score = 16.3 bits (31),  Expect = 61309, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  235   HLRAP  239
             HLR P
Sbjct  1295  HLRVP  1299


 Score = 16.3 bits (31),  Expect = 62446, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  306   TLPDPSH  312
             TLP P H
Sbjct  1544  TLPSPQH  1550


 Score = 15.9 bits (30),  Expect = 63604, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  20  RPFNG  24
           RPF G
Sbjct  5   RPFTG  9


 Score = 15.9 bits (30),  Expect = 74356, Method: Composition-based stats.
 Identities = 3/5 (60%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  247   PEDMK  251
             PE+M 
Sbjct  1664  PEEMR  1668


>ref|XP_002368881.1|  hypothetical protein TGME49_034410 [Toxoplasma gondii ME49]
Length=3200

 GENE ID: 7900176 TGME49_034410 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 28.6 bits (60),  Expect = 9.5, Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 6/22 (27%)

Query  153   TV--MISIV-WVLSFTISCPLL  171
             TV  MIS+  WV SF I   LL
Sbjct  2674  TVSRMISVLLWVISFII---LL  2692


 Score = 19.7 bits (39),  Expect =  4992, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 1/7 (14%)

Query  389  FFITHIL  395
            FF THIL
Sbjct  399  FF-THIL  404


 Score = 18.9 bits (37),  Expect = 10701, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 3/9 (33%)

Query  3    PL---NLSW  8
            PL   NLSW
Sbjct  882  PLSLINLSW  890


 Score = 18.5 bits (36),  Expect = 12510, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  319   PDSPA  323
             PDSPA
Sbjct  1712  PDSPA  1716


 Score = 18.0 bits (35),  Expect = 17900, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 7/8 (87%), Gaps = 0/8 (0%)

Query  368   EKKATQML  375
             EKKA ++L
Sbjct  2381  EKKAAELL  2388


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 7/9 (77%), Gaps = 0/9 (0%)

Query  200   VPFIVTLLV  208
             + FI+ LLV
Sbjct  2686  ISFIILLLV  2694


 Score = 17.2 bits (33),  Expect = 34368, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  284   LSSTSPPER  292
             L   SP ER
Sbjct  2915  LTPASPQER  2923


 Score = 16.8 bits (32),  Expect = 37330, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  296  SPIPP  300
            SP+PP
Sbjct  165  SPVPP  169


 Score = 16.8 bits (32),  Expect = 38022, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 1/9 (11%)

Query  201  PFIVTLLVY  209
            PF V  LVY
Sbjct  467  PFAVA-LVY  474


 Score = 16.3 bits (31),  Expect = 49177, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  197  SFYVPFIVTL  206
            SF + FI TL
Sbjct  413  SFLICFIATL  422


 Score = 16.3 bits (31),  Expect = 49631, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  287  TSPPERT  293
            TS  ERT
Sbjct  567  TSSRERT  573


 Score = 16.3 bits (31),  Expect = 58556, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 4/20 (20%)

Query  305   LTLPDPSHHGLH--STPDSP  322
             L L  PS  GL    TP+ P
Sbjct  1136  LAL--PSRRGLAEGATPNGP  1153


 Score = 15.9 bits (30),  Expect = 65985, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 4/7 (57%), Gaps = 0/7 (0%)

Query  226  KRSSRAF  232
             R SR F
Sbjct  757  RRGSRTF  763


 Score = 15.9 bits (30),  Expect = 75735, Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 9/17 (52%), Gaps = 1/17 (5%)

Query  360   RRKLSQQKEKKATQMLA  376
             RR LS Q  K   Q LA
Sbjct  1094  RRALSPQM-KMRIQRLA  1109


 Score = 15.9 bits (30),  Expect = 81511, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 2/10 (20%)

Query  156   ISIV-WVLSF  164
             I I  W LSF
Sbjct  1527  INIALW-LSF  1535


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  296  SPIPPS  301
            SP PP 
Sbjct  438  SPLPPT  443


 Score = 15.5 bits (29),  Expect = 86926, Method: Composition-based stats.
 Identities = 3/6 (50%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  252   LCTVIM  257
             LC ++M
Sbjct  1625  LCNIVM  1630


 Score = 15.5 bits (29),  Expect = 95290, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  12    DLERQ  16
             DL RQ
Sbjct  2471  DLNRQ  2475


>ref|XP_002364572.1|  hypothetical protein TGME49_113610 [Toxoplasma gondii ME49]
Length=6444

 GENE ID: 7900467 TGME49_113610 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 28.6 bits (60),  Expect =    12, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 5/15 (33%)

Query  268   RRVEAARRAQELEME  282
             RR+EAAR     EME
Sbjct  1996  RRIEAAR-----EME  2005


 Score = 24.4 bits (50),  Expect =   214, Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 6/33 (18%)

Query  304  QLTLPDPSHHGLHSTPDSPAKPEKNGHAKDHPK  336
            QLTL  PS H L S    PA    N   KD+PK
Sbjct  445  QLTLQVPSRHPLLSAL--PA----NVPVKDQPK  471


 Score = 21.0 bits (42),  Expect =  2085, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  267  RRRVEAA--RR  275
              RVEAA  RR
Sbjct  350  KKRVEAALCRR  360


 Score = 21.0 bits (42),  Expect =  2328, Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)

Query  15    RQNW-SRPFNGSDGKA-DR  31
             RQ+W S P    +G A DR
Sbjct  6129  RQDWWSNPIHSIEGRALDR  6147


 Score = 19.7 bits (39),  Expect =  4595, Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 15/30 (50%)

Query  64    ALQTTTNYLIVSLAVADLLVATLVMPWVVY  93
             ALQ     L VS  V    VAT     VVY
Sbjct  5520  ALQ-----LFVS-SV----VAT-----VVY  5534


 Score = 19.7 bits (39),  Expect =  5226, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  285  SSTSPPE  291
            S TSPP+
Sbjct  683  STTSPPD  689


 Score = 19.7 bits (39),  Expect =  5226, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 5/12 (41%)

Query  316   HSTPD-----SP  322
             HSTPD     SP
Sbjct  4908  HSTPDALADLSP  4919


 Score = 18.0 bits (35),  Expect = 14624, Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%), Gaps = 11/19 (57%)

Query  292   RTRYSPI--------PPSH  302
             RTR   I        PPSH
Sbjct  2711  RTR---IVDSSNRQVPPSH  2726


 Score = 18.0 bits (35),  Expect = 14895, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  82    LVATLVM  88
             LVA  VM
Sbjct  5454  LVAAVVM  5460


 Score = 18.0 bits (35),  Expect = 18232, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  358   MSRR  361
             MSRR
Sbjct  1021  MSRR  1024


 Score = 18.0 bits (35),  Expect = 18232, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  358   MSRR  361
             MSRR
Sbjct  2125  MSRR  2128


 Score = 17.6 bits (34),  Expect = 25379, Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 10/25 (40%), Gaps = 10/25 (40%)

Query  267   RRRVEAARRAQELEME-----MLSS  286
             RR  E  RR     ME     ML S
Sbjct  2127  RRNTEVCRR-----METVPEHMLFS  2146


 Score = 17.6 bits (34),  Expect = 26088, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  30    DRPH  33
             DRPH
Sbjct  3414  DRPH  3417


 Score = 17.2 bits (33),  Expect = 28078, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 2/10 (20%)

Query  17    NWSRP--FNG  24
             N SRP  F G
Sbjct  5991  NRSRPLAFSG  6000


 Score = 17.2 bits (33),  Expect = 31640, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  267   RRRV  270
             RRRV
Sbjct  4096  RRRV  4099


 Score = 17.2 bits (33),  Expect = 34685, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  188   AFVVYS  193
             AF VYS
Sbjct  4948  AFPVYS  4953


 Score = 17.2 bits (33),  Expect = 35005, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  314   GLHSTPDSP  322
             G HS PD P
Sbjct  4006  GFHSGPDWP  4014


 Score = 16.8 bits (32),  Expect = 38728, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  149   KRRVTV  154
              RRV V
Sbjct  4096  RRRVSV  4101


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  321   SPAKPEK  327
             SPA PE 
Sbjct  1381  SPAEPER  1387


 Score = 16.8 bits (32),  Expect = 46114, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 4/11 (36%)

Query  147   SSKRR----VT  153
             SS RR    VT
Sbjct  1032  SSRRRLPKVVT  1042


 Score = 16.3 bits (31),  Expect = 48282, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  87    VMPWV  91
             V PWV
Sbjct  4037  VFPWV  4041


 Score = 16.3 bits (31),  Expect = 49631, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  285  SSTSPPERTR  294
            S TS PE  R
Sbjct  913  SDTSAPESDR  922


 Score = 16.3 bits (31),  Expect = 54909, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  173   GLNNAD  178
             G NNAD
Sbjct  5432  GQNNAD  5437


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 6/26 (23%)

Query  407   LYSAFT--WLG----YVNSAVNPIIY  426
             LY  F    LG    +V S V  ++Y
Sbjct  5509  LYNGFKCGSLGALQLFVSSVVATVVY  5534


 Score = 15.9 bits (30),  Expect = 67209, Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 17/38 (44%)

Query  294  RYSPIPPSHHQLTLPD--P---SHHGLHSTPDSPAKPE  326
            RY PI        LP+  P   S    H   D  A PE
Sbjct  894  RYLPI-------SLPEVSPGSSS----HPASDTSA-PE  919


 Score = 15.9 bits (30),  Expect = 71018, Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 17/34 (50%)

Query  208   VYIKIY------IVLRRRRKRVNTKRSSRAFRAH  235
             VYI  +      I L           S RA R H
Sbjct  5310  VYIRTFCIRPIQILL-----------STRAPREH  5332


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  297   PIPPSH  302
             P+P SH
Sbjct  3610  PVPHSH  3615


 Score = 15.5 bits (29),  Expect = 87728, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  217   RRRRK  221
             RR RK
Sbjct  4718  RRSRK  4722


 Score = 15.5 bits (29),  Expect = 89355, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  230  RAFRAHLRAP  239
            R  RA L AP
Sbjct  49   RSLRAPLVAP  58


 Score = 15.5 bits (29),  Expect = 94419, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 2/11 (18%)

Query  300  PSHHQL--TLP  308
            PS H L   LP
Sbjct  451  PSRHPLLSALP  461


 Score = 15.5 bits (29),  Expect = 98857, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  274  RRAQE  278
            RR QE
Sbjct  548  RRQQE  552


 Score = 15.5 bits (29),  Expect = 99770, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  261   GSFPV  265
             G FPV
Sbjct  3919  GGFPV  3923


>ref|YP_710064.1|  hypothetical protein BAPKO_0654 [Borrelia afzelii PKo]
Length=453

 GENE ID: 4227240 BAPKO_0654 | hypothetical protein [Borrelia afzelii PKo]
(10 or fewer PubMed links)

 Score = 28.6 bits (60),  Expect =    12, Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 39/131 (29%), Gaps = 21/131 (16%)

Query  169  PLLFGLNNADQNECIIANPAFVV-----------YSSIVSFYVPFIVT---LLVYIKIYI  214
             LL  L  AD N CI                   +  I S ++ FI+    L V I    
Sbjct  316  QLLLALASADKN-CIFSHGGITLSLLLATYMWSGFDKIMSIFIGFIIIKEGLNVIINNAN  374

Query  215  VLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVI---MKSNGSFPVNRRRVE  271
             L      ++ KRS       L    K    H +  KL   I   + S   F        
Sbjct  375  NLLSKQN-IDLKRSVKDTLKNLHINFKALNFHNQGNKLVLYIKINLNSENDFQSFINKTK  433

Query  272  AARRA--QELE  280
              R    QE E
Sbjct  434  DIRKIIKQEYE  444


>ref|XP_002370276.1|  ATP-dependent helicase, putative [Toxoplasma gondii ME49]
Length=1603

 GENE ID: 7894095 TGME49_095070 | ATP-dependent helicase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.8 bits (58),  Expect =    19, Method: Composition-based stats.
 Identities = 11/16 (68%), Positives = 11/16 (68%), Gaps = 4/16 (25%)

Query  268  RRVEA---ARR-AQEL  279
            RRV A   ARR AQEL
Sbjct  551  RRVAAVMVARRVAQEL  566


 Score = 18.9 bits (37),  Expect =  9238, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  434   RKAFL  438
             RKAFL
Sbjct  1563  RKAFL  1567


 Score = 18.0 bits (35),  Expect = 16940, Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 8/21 (38%), Gaps = 12/21 (57%)

Query  216  LR---RRRKRVNTKRSSRAFR  233
            LR   RRR         R FR
Sbjct  191  LRKGKRRR---------REFR  202


 Score = 17.6 bits (34),  Expect = 23581, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  23   NGSDGKAD  30
            N SDGK +
Sbjct  850  NASDGKEE  857


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 3/12 (25%)

Query  273  ARRAQ---ELEM  281
            ARR +   ELE+
Sbjct  104  ARREEILKELEL  115


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  274  RRAQELE  280
            RR +E E
Sbjct  385  RRSEEVE  391


 Score = 15.9 bits (30),  Expect = 65382, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  147  SSKRR  151
            SS RR
Sbjct  827  SSRRR  831


>ref|XP_002370979.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=593

 GENE ID: 7898495 TGME49_016710 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.8 bits (58),  Expect =    19, Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 44/178 (24%), Gaps = 25/178 (14%)

Query  199  YVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVIMK  258
             V   + LLV    +IV RR       K      R +   PL G C       L      
Sbjct  218  CVCLGISLLV--ALFIVPRRPWPSPY-KPYAQRLRDQ---PLAGGCGVAMQSELRLASSG  271

Query  259  SNGSFPVNRRRVEAARRAQELEMEMLSSTSPPER-TRYSPI---PPSHHQLTLPDPSHHG  314
               SF             QE E E    T   +R   Y  +   PPS  +     PS   
Sbjct  272  LGESF--------EDPEPQEGEVEQ--DTGRQDREVSYTAVAVPPPSCEE----KPSLPV  317

Query  315  LHSTPDSPAKPEKNGHAKDHPKIAKIFEIQTMPNGKTRTSLKTM-SRRKLSQQKEKKA  371
            L S P                           P    R    T   R  L    +   
Sbjct  318  LASLPPATGAVGDSASGRANQNEENEALNTAQPHADYRNCPVTVRPRPSLGRPRQTRP  375


 Score = 18.5 bits (36),  Expect = 11307, Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query  371  ATQMLAIVLGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFN  430
            A  +LA     F +C    ++               L SA    G    A NPI      
Sbjct  486  AASLLAAFQLSFLVCQICCYVAETFEEENQGKLIGLLCSA---AGATSLAANPIMEYSVR  542

Query  431  IEFRKAFLK  439
              FR A L 
Sbjct  543  NGFRPALLS  551


 Score = 15.9 bits (30),  Expect = 71673, Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 3/23 (13%)

Query  403  IPPVLY--SAFTWL-GYVNSAVN  422
            I  VL+   AF WL G V  A +
Sbjct  51   IADVLFRAGAFEWLCGGVSTAPD  73


>ref|XP_002369125.1|  hypothetical protein TGME49_083760 [Toxoplasma gondii ME49]
Length=1261

 GENE ID: 7896915 TGME49_083760 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.8 bits (58),  Expect =    20, Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query  326   EKNGHAKDHPKIAKIFEIQTM--PNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFI  383
             EK   A D  K+    E   M    GKTRTS    SRRK     E  A Q L    G   
Sbjct  1026  EKKREARDARKVTDGLESKRMKEEKGKTRTSR--FSRRKH----EPTAKQTLSYSTGQSL  1079

Query  384   I  384
             I
Sbjct  1080  I  1080


 Score = 15.9 bits (30),  Expect = 83023, Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 24/72 (33%), Gaps = 16/72 (22%)

Query  298   IPPSHHQLTLP-DPSHHGLHSTPDSPAKPEKNGHAKDHPKIAKIFEIQTMP--NGKT--R  352
             +  S   L L  DP    LH   DS       G A   P     FE +T P   G T  R
Sbjct  1145  VASSRRVLPLAGDP----LHAPRDS-------GGACSSPAHPSPFELETKPVFGGPTEGR  1193

Query  353   TSLKTMSRRKLS  364
                    RR  S
Sbjct  1194  VPAEAGERREAS  1205


>ref|XP_002365931.1|  mpv17 / PMP22 family domain-containing protein [Toxoplasma gondii 
ME49]
Length=858

 GENE ID: 7896981 TGME49_073290 | mpv17 / PMP22 family domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.8 bits (58),  Expect =    20, Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query  235  HLRAPLKGNCTHPEDM-KLCTVIMKSNGSFPVNRRRVEAARRAQELEME  282
            + RA L   CT   D    C     S     V  R  E  RR ++ EME
Sbjct  412  QSRAGLGSVCTPEGDADENCAAFAES-----VGARKTEGDRRPEDTEME  455


 Score = 20.2 bits (40),  Expect =  3652, Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 9/25 (36%), Gaps = 0/25 (0%)

Query  218  RRRKRVNTKRSSRAFRAHLRAPLKG  242
            RR    N  R    FR  L  P K 
Sbjct  340  RRPEEENGGRNASSFRERLKRPIKD  364


 Score = 17.6 bits (34),  Expect = 24689, Method: Compositional matrix adjust.
 Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 0/18 (0%)

Query  81   LLVATLVMPWVVYLEVVG  98
            L   T  + W VYL V  
Sbjct  798  LWDTTIDLFWTVYLSVAA  815


 Score = 16.3 bits (31),  Expect = 60193, Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 3/31 (9%)

Query  40   LLTLL---IAVIVFGNVLVCMAVSREKALQT  67
            LLT       V+V  +VL    VS      T
Sbjct  542  LLTAFYHKLEVVVHDDVLSPPGVSQPPPART  572


>ref|ZP_03435378.1|  conserved hypothetical integral membrane protein [Borrelia afzelii 
ACA-1]
Length=451


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.8 bits (58),  Expect =    21, Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 39/131 (29%), Gaps = 21/131 (16%)

Query  169  PLLFGLNNADQNECIIANPAFVV-----------YSSIVSFYVPFIVT---LLVYIKIYI  214
             LL  L  AD N CI                   +  I S ++ FI+    L V I    
Sbjct  314  QLLLALASADKN-CIFSHGGITLSLLLATYMWSGFDKIMSIFIGFIIIKEGLNVIINNAN  372

Query  215  VLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVI---MKSNGSFPVNRRRVE  271
             L      ++ KRS       L    K    H +  KL   I   + S   F        
Sbjct  373  NLLSKQN-IDLKRSVKDTLKNLHINFKTLNFHNQGNKLVLYIKINLNSENDFQSFINKTK  431

Query  272  AARRA--QELE  280
              R    QE E
Sbjct  432  DIRKIIKQEYE  442


 Score = 16.3 bits (31),  Expect = 56444, Method: Compositional matrix adjust.
 Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 4/35 (11%)

Query  305  LTLPDPSHHGLH----STPDSPAKPEKNGHAKDHP  335
             TL   S   LH       +     +  GH  DH 
Sbjct  222  ITLGGESGFNLHIHQKKNKNDNIYEDDHGHSHDHE  256


>ref|XP_002370498.1|  hypothetical protein TGME49_077930 [Toxoplasma gondii ME49]
Length=1573

 GENE ID: 7900356 TGME49_077930 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.8 bits (58),  Expect =    22, Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 3/16 (18%)

Query  269   RVEAARRAQELE-MEM  283
             R+  ARR  ELE MEM
Sbjct  1297  RISEARR--ELEMMEM  1310


 Score = 17.6 bits (34),  Expect = 19622, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  247   PEDM  250
             PEDM
Sbjct  1027  PEDM  1030


 Score = 15.9 bits (30),  Expect = 64191, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 2/12 (16%)

Query  52    NVLVCMAVSREK  63
             N L  MA+ R+K
Sbjct  1183  NAL--MAIFRQK  1192


 Score = 15.9 bits (30),  Expect = 68455, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  267   RRRVE  271
             RR VE
Sbjct  1088  RRQVE  1092


>ref|XP_002368587.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=1886

 GENE ID: 7900883 TGME49_064480 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.8 bits (58),  Expect =    22, Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 28/57 (49%)

Query  286  STSPPERTRYSP--IPPSHHQLTLPDPS-----HHGLHSTPDSPAKPEKNGHA--KD  333
            S SP     YSP   P S+       PS     HH L ST DSPA      HA  KD
Sbjct  365  SASP-----YSPSLFPLSQ------SPSFSPLFHHSL-ST-DSPA------HASEKD  402


 Score = 18.9 bits (37),  Expect =  8662, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  434   RKAFL  438
             RKAFL
Sbjct  1122  RKAFL  1126


 Score = 17.6 bits (34),  Expect = 21119, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 2/9 (22%)

Query  361   RK--LSQQK  367
             RK  LS+QK
Sbjct  1122  RKAFLSEQK  1130


 Score = 16.8 bits (32),  Expect = 39446, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  317   STPDSP  322
             S P+SP
Sbjct  1251  SSPESP  1256


 Score = 16.3 bits (31),  Expect = 50551, Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 9/20 (45%)

Query  284   LSSTSPPERTRYSPIPPSHH  303
             L S SP      SP    HH
Sbjct  1588  LASASPS-----SP----HH  1598


 Score = 16.3 bits (31),  Expect = 61875, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  217  RRRRKR  222
            RR R R
Sbjct  148  RRKRER  153


 Score = 15.9 bits (30),  Expect = 75735, Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 12/43 (27%), Gaps = 22/43 (51%)

Query  285   SSTSP-----PERTRYSPIPPS----------------HHQLT  306
               TSP      ER R    PPS                H Q T
Sbjct  1665  TTTSPCVYSLSERSR-AGLPPSSAFRCRGTLFTQTFPPHSQIT  1706


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  173  GLNNADQ  179
            GLN  DQ
Sbjct  214  GLNREDQ  220


>ref|YP_002474254.1|  hypothetical protein BGAPBR_Q0003 [Borrelia garinii PBr]
Length=137

 GENE ID: 7276590 BGAPBR_Q0003 | hypothetical protein [Borrelia garinii PBr]

 Score = 27.8 bits (58),  Expect =    22, Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 11/25 (44%), Gaps = 8/25 (32%)

Query  19  SRPFN------GSDGKADRPHYNYY  37
            R FN      G DGK D    NYY
Sbjct  31  TRSFNEQAKGLGNDGKGDKS--NYY  53


>ref|XP_002365278.1|  hypothetical protein TGME49_061450 [Toxoplasma gondii ME49]
Length=1111

 GENE ID: 7894764 TGME49_061450 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.4 bits (57),  Expect =    23, Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query  113  LDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVTVMISIVWVLSFTISCPLLF  172
            ++V    A    L A+  D    VA     N  Y  K R+T   SI   L   +    LF
Sbjct  411  MEVQVKQAVTEILSAVTDDVLREVAREAISN--YRRKQRITGKTSI--GLKLHVGSASLF  466

Query  173  ---GLNNADQ  179
               GL   ++
Sbjct  467  EGAGLKEGNE  476


 Score = 19.3 bits (38),  Expect =  6397, Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 6/31 (19%)

Query  371  ATQMLAIVLGVFI------ICWLPFFITHIL  395
            ATQ  A    VFI      I   PF   H  
Sbjct  553  ATQPPAGLFHVFIYENGREIGRVPFDASHLV  583


>ref|XP_002367600.1|  leucine rich repeat containing protein / ankyrin repeat containing 
protein [Toxoplasma gondii ME49]
Length=2849

 GENE ID: 7897494 TGME49_003180 | leucine rich repeat containing protein /
ankyrin repeat containing protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.4 bits (57),  Expect =    23, Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 35/67 (52%)

Query  269   RVEAAR--RAQELEMEMLSSTSP-----PE------RTRYSPIPPSHHQLTLPDPSHHGL  315
             R EA R  R QE      SSTS      PE      RTR   + PS              
Sbjct  2388  RGEATRKGRGQER-----SSTSSCRELSPEGRASGLRTR--TVSPS--------------  2426

Query  316   HSTPDSP  322
              S P+SP
Sbjct  2427  -SAPESP  2432


 Score = 25.7 bits (53),  Expect =    89, Method: Composition-based stats.
 Identities = 7/7 (100%), Positives = 7/7 (100%), Gaps = 0/7 (0%)

Query  267   RRRVEAA  273
             RRRVEAA
Sbjct  1234  RRRVEAA  1240


 Score = 18.9 bits (37),  Expect =  8742, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  361  RKLSQQKEKKAT  372
            R L  QK K AT
Sbjct  531  RRLDDQKSKTAT  542


 Score = 18.5 bits (36),  Expect = 11307, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  236   LRAPL  240
             LRAPL
Sbjct  2171  LRAPL  2175


 Score = 18.5 bits (36),  Expect = 11839, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  272   AARRAQ  277
             AARR Q
Sbjct  1449  AARRGQ  1454


 Score = 18.0 bits (35),  Expect = 18232, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  228   SSRAFRAHLR  237
             S  AF A LR
Sbjct  2215  SPSAFKADLR  2224


 Score = 17.6 bits (34),  Expect = 26088, Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 7/18 (38%)

Query  397  IHCDCNIPPVLYSAFTWL  414
            +H DCN+       FT L
Sbjct  622  VHVDCNV-------FTLL  632


 Score = 17.2 bits (33),  Expect = 34685, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  274   RRAQEL  279
             RR +EL
Sbjct  1751  RRSEEL  1756


 Score = 16.8 bits (32),  Expect = 44044, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  288  SPPERTR  294
            SPP R R
Sbjct  75   SPPPRVR  81


 Score = 16.3 bits (31),  Expect = 55927, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  240   LKGNCTHPE  248
             L G C H E
Sbjct  1473  LRGTCEHAE  1481


 Score = 15.5 bits (29),  Expect = 97953, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  406   VLYSAF  411
             VL+S F
Sbjct  1175  VLFSVF  1180


 Score = 15.5 bits (29),  Expect = 98857, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  168   CPLLFGLN  175
             CP  F LN
Sbjct  1804  CPFTFDLN  1811


>ref|XP_002370384.1|  formin binding protein, putative [Toxoplasma gondii ME49]
Length=601

 GENE ID: 7901335 TGME49_106220 | formin binding protein, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 27.4 bits (57),  Expect =    26, Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query  221  KRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELE  280
            KRV T R  R      RA  K      E+ K C V       F V  R  +  RR     
Sbjct  523  KRVETDREGRTGGPTQRAQSKQRRREKEEKKPCIV-----EEF-VAQRKGQERRRQAKKK  576

Query  281  MEMLSSTSPPERTRYSPI  298
              M       ER R    
Sbjct  577  TLMRRHNEREERPRKGSL  594


 Score = 18.0 bits (35),  Expect = 16480, Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 7/36 (19%)

Query  211  KIYIVLRRRRKRVNTKRSSRAFRAHL-RAPLKGNCT  245
               +V RR RKR +      AFR  L  A  KG  T
Sbjct  382  RRHVVFRRERKRRD------AFRSLLDEAAKKGELT  411


>ref|XP_002371203.1|  armadillo/beta-catenin-like repeat-containing protein [Toxoplasma 
gondii ME49]
Length=1297

 GENE ID: 7901467 TGME49_097830 | armadillo/beta-catenin-like repeat-containing
protein [Toxoplasma gondii ME49]

 Score = 26.9 bits (56),  Expect =    31, Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query  157   SIVWVLSFTISCPLLFGLNNADQNECIIANPAFVVYSSIVSFYVP  201
             S   V S  +S PLLFG  +   +  +   P        VSF  P
Sbjct  981   SSLSVFSLDVS-PLLFGWGDGAAD--VASAPEPTGCGGTVSFALP  1022


>ref|XP_002365186.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=396

 GENE ID: 7895527 TGME49_060030 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    31, Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query  315  LHSTPDS-PAKPEKNGHAKDHPKIAKIFEIQT  345
            LHST DS P K +  G+   HPK  K  E + 
Sbjct  34   LHSTADSAPKKRQMRGQPRRHPKKSKGGELHA  65


 Score = 17.2 bits (33),  Expect = 33128, Method: Compositional matrix adjust.
 Identities = 11/50 (22%), Positives = 12/50 (24%), Gaps = 17/50 (34%)

Query  358  MSRRKLSQQK-----------------EKKATQMLAIVLGVFIICWLPFF  390
            M R     QK                 EKK    L   L +      PF 
Sbjct  181  MERKRVCSQKDSSGISALDGPLSLLDGEKKDVWALGCLLAILLTGRHPFL  230


>ref|XP_002364233.1|  PX domain-containing protein [Toxoplasma gondii ME49]
Length=829

 GENE ID: 7900493 TGME49_109870 | PX domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    33, Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query  285  SSTSPPERTRYSPIPPSHHQLT-LPDPSHHGLHST  318
              T PP+     P   S HQ+  LP  SH G  ST
Sbjct  285  AATVPPDQSKEIPLNSSRHQMGCLPSSSHEGFRST  319


 Score = 21.8 bits (44),  Expect =  1379, Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 6/42 (14%)

Query  289  PPERTRYSP-----IPPSHHQLTLPDPSHHG-LHSTPDSPAK  324
            P ER  YS      +   HH  TLP  S  G L S  D  A 
Sbjct  229  PGERKPYSASERASVSTAHHPFTLPVASLSGRLESFVDTSAR  270


 Score = 16.3 bits (31),  Expect = 52928, Method: Compositional matrix adjust.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  408  YSAFTWL  414
            YS F WL
Sbjct  455  YSDFEWL  461


>ref|XP_002365085.1|  hypothetical protein TGME49_058710 [Toxoplasma gondii ME49]
Length=1741

 GENE ID: 7894765 TGME49_058710 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    34, Method: Composition-based stats.
 Identities = 8/11 (72%), Positives = 8/11 (72%), Gaps = 0/11 (0%)

Query  268  RRVEAARRAQE  278
            RRVEA RR  E
Sbjct  697  RRVEASRRPSE  707


 Score = 23.1 bits (47),  Expect =   566, Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 20/36 (55%)

Query  260   NGSFPVNRRRV--------EAA-------RRA-QEL  279
             NG     RRRV        EAA       RR  Q+L
Sbjct  1548  NGT----RRRVEEKPPGSAEAAQFSPRHFRRSMQDL  1579


 Score = 20.6 bits (41),  Expect =  2600, Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 11/33 (33%)

Query  268   RRVEAARRAQELEMEMLSSTSPPERTRYSPIPP  300
             RR  AARR +E E     S S   RT     PP
Sbjct  1308  RRLIAARRREE-E-----SASA--RT---SLPP  1329


 Score = 18.9 bits (37),  Expect =  9672, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 3/14 (21%)

Query  268  RRVEAARRAQELEM  281
            R VE  RR   L M
Sbjct  973  RSVEEERR---LAM  983


 Score = 18.5 bits (36),  Expect = 11101, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 4/14 (28%)

Query  267  RR---R-VEAARRA  276
            RR   R VEA R A
Sbjct  979  RRLAMREVEAGRQA  992


 Score = 18.5 bits (36),  Expect = 11517, Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 7/23 (30%)

Query  215   VLRRRRKRVNTKRSSRAFRAHLR  237
             VLR  R RV T R      A LR
Sbjct  993   VLREKR-RVATER------AKLR  1008


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  216  LRRR  219
            LRRR
Sbjct  403  LRRR  406


 Score = 16.3 bits (31),  Expect = 49631, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  149  KRRV  152
            KRRV
Sbjct  997  KRRV  1000


 Score = 16.3 bits (31),  Expect = 51964, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  235   HLRAP  239
             HLR P
Sbjct  1377  HLRGP  1381


 Score = 16.3 bits (31),  Expect = 54909, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  345   TMPNGK  350
             T+P+GK
Sbjct  1673  TLPDGK  1678


 Score = 16.3 bits (31),  Expect = 56444, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  360  RRKLS  364
            RR LS
Sbjct  57   RRRLS  61


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  237  RAPL  240
            RAPL
Sbjct  711  RAPL  714


>ref|YP_002725130.1|  hypothetical protein BSV1_R03 [Borrelia sp. SV1]
Length=68

 GENE ID: 7668347 BSV1_R03 | hypothetical protein [Borrelia sp. SV1]

 Score = 26.9 bits (56),  Expect =    35, Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 8/25 (32%)

Query  19  SRPFN------GSDGKADRPHYNYY  37
            R FN      G +GK DR   NYY
Sbjct  38  TRSFNEQAKGFGNNGKGDRG--NYY  60


>ref|ZP_03673743.1|  phosphatidyltransferase [Borrelia burgdorferi WI91-23]
Length=234

 Score = 26.9 bits (56),  Expect =    35, Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query  108  DIFVTLDVMMCTASILNLCAISIDRYTA-VAMPMLYNTRYSSKRRVTVMISIVWVLSFTI  166
            + FV L++      I NL   SI   T  +     Y       R +T+ I I+  L F +
Sbjct  136  NLFVILNIIFKMEQITNLITMSICIITSFIPIKFIYPSKTKELRKITIPITIISCLIFVV  195

Query  167  S  167
            S
Sbjct  196  S  196


>ref|XP_002368746.1|  hypothetical protein TGME49_066670 [Toxoplasma gondii ME49]
Length=1766

 GENE ID: 7893778 TGME49_066670 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    36, Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 4/14 (28%)

Query  218   RRRKRVNTKRSSRA  231
             RRR    TKRS RA
Sbjct  1156  RRR----TKRSARA  1165


 Score = 22.7 bits (46),  Expect =   576, Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 5/23 (21%)

Query  281   MEML---SSTSPPERTRYSPIPP  300
             M M+   SS SP  R  Y  IPP
Sbjct  1278  M-MMNATSSASPSNRLPYN-IPP  1298


 Score = 18.9 bits (37),  Expect =  9761, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 0/13 (0%)

Query  19   SRPFNGSDGKADR  31
            SR F   DG  DR
Sbjct  218  SRVFESNDGNKDR  230


 Score = 18.5 bits (36),  Expect = 11623, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 3/14 (21%)

Query  8     WYDDDLERQNWSRP  21
             W   DL   NWS P
Sbjct  1734  W---DLNADNWSSP  1744


 Score = 18.5 bits (36),  Expect = 13713, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  286   STSPPERT  293
             STS  ERT
Sbjct  1308  STSSGERT  1315


 Score = 18.0 bits (35),  Expect = 17736, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 8/11 (72%), Gaps = 1/11 (9%)

Query  241  KGN-CTHPEDM  250
            KGN  T+PE M
Sbjct  159  KGNEHTQPEHM  169


 Score = 18.0 bits (35),  Expect = 19089, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 4/12 (33%)

Query  402   NIPP----VLYS  409
             NIPP    V YS
Sbjct  1295  NIPPGEEDVSYS  1306


 Score = 16.8 bits (32),  Expect = 37330, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 8/16 (50%), Gaps = 4/16 (25%)

Query  267   RRRVEAAR--RAQELE  280
             RRR    R  RA E E
Sbjct  1156  RRRTK--RSARAREIE  1169


 Score = 16.3 bits (31),  Expect = 56964, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  316  HSTPD  320
            HS PD
Sbjct  98   HSAPD  102


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  265   VNRRR  269
             V RRR
Sbjct  1694  VERRR  1698


 Score = 15.9 bits (30),  Expect = 64784, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 1/6 (16%)

Query  295   YSPIPP  300
             YSP PP
Sbjct  1535  YSP-PP  1539


>ref|NP_212383.1|  phosphatidyltransferase [Borrelia burgdorferi B31]
 ref|ZP_03086779.1|  phosphatidyltransferase [Borrelia burgdorferi 80a]
 ref|YP_002374772.1|  phosphatidyltransferase [Borrelia burgdorferi ZS7]
 ref|ZP_03589132.1|  phosphatidyltransferase [Borrelia burgdorferi 72a]
 ref|ZP_03674390.1|  phosphatidyltransferase [Borrelia burgdorferi CA-11.2a]
 ref|ZP_03771128.1|  phosphatidyltransferase [Borrelia burgdorferi 118a]
 ref|ZP_03796777.1|  phosphatidyltransferase [Borrelia burgdorferi 29805]
 ref|ZP_03797093.1|  phosphatidyltransferase [Borrelia burgdorferi Bol26]
Length=234

 GENE ID: 1195086 BB0249 | phosphatidyltransferase [Borrelia burgdorferi B31]
(10 or fewer PubMed links)

 Score = 26.9 bits (56),  Expect =    36, Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query  108  DIFVTLDVMMCTASILNLCAISIDRYTA-VAMPMLYNTRYSSKRRVTVMISIVWVLSFTI  166
            + FV L++      I NL   SI   T  +     Y       R +T+ I I+  L F +
Sbjct  136  NLFVILNIIFKMEQITNLITMSICIITSFIPIKFIYPSKTKELRKITIPITIISCLIFVV  195

Query  167  S  167
            S
Sbjct  196  S  196


>ref|ZP_03623374.1|  phosphatidyltransferase [Borrelia burgdorferi 64b]
Length=234

 Score = 26.9 bits (56),  Expect =    37, Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query  108  DIFVTLDVMMCTASILNLCAISIDRYTA-VAMPMLYNTRYSSKRRVTVMISIVWVLSFTI  166
            + FV L++      I NL   SI   T  +     Y       R +T+ I I+  L F +
Sbjct  136  NLFVILNIIFKMEQITNLITMSICIITSFIPIKFIYPSKTKELRKITIPITIISCLIFVV  195

Query  167  S  167
            S
Sbjct  196  S  196


>ref|ZP_03773183.1|  phosphatidyltransferase [Borrelia sp. SV1]
Length=234

 Score = 26.9 bits (56),  Expect =    37, Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query  108  DIFVTLDVMMCTASILNLCAISIDRYTA-VAMPMLYNTRYSSKRRVTVMISIVWVLSFTI  166
            + FV L++      I NL   SI   T  +     Y       R +T+ I I+  L F +
Sbjct  136  NLFVILNIIFKMEQITNLITMSICIITSFIPIKFIYPSKTKELRKITIPITIISCLIFVV  195

Query  167  S  167
            S
Sbjct  196  S  196


>ref|NP_212169.1|  DNA topoisomerase IV subunit A [Borrelia burgdorferi B31]
 ref|ZP_03087157.1|  DNA topoisomerase IV subunit A [Borrelia burgdorferi 80a]
 ref|ZP_03436412.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi 156a]
 ref|YP_002374569.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi ZS7]
 ref|ZP_03623717.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi 64b]
 ref|ZP_03770195.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi 94a]
 ref|ZP_03797575.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi Bol26]
Length=626

 GENE ID: 1194871 BB0035 | DNA topoisomerase IV subunit A
[Borrelia burgdorferi B31] (10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    37, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 73676, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|ZP_03796676.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi 29805]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    38, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 74356, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|ZP_03540127.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
garinii Far04]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    39, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 73002, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|XP_002371435.1|  3',5'-cyclic phosphodiesterase, putative [Toxoplasma gondii ME49]
Length=1085

 GENE ID: 7899746 TGME49_080410 | 3',5'-cyclic phosphodiesterase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    39, Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 12/73 (16%)

Query  287  TSPPERTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKNGHAKDHPKIAKIFEIQTM  346
            T  P+R      PP  +   LP  S HG H   +  A     G A          EIQ  
Sbjct  72   TFLPQRL-HEATPP--QDGALPAASGHG-HTDAETHAQGANPGEARP--------EIQAG  119

Query  347  PNGKTRTSLKTMS  359
            P+    TS   +S
Sbjct  120  PDSDSKTSSSPLS  132


 Score = 16.8 bits (32),  Expect = 38373, Method: Compositional matrix adjust.
 Identities = 6/12 (50%), Positives = 8/12 (66%), Gaps = 0/12 (0%)

Query  214  IVLRRRRKRVNT  225
            + LRR   RV+T
Sbjct  635  VQLRRLKRRVDT  646


>ref|ZP_03674535.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi CA-11.2a]
 ref|ZP_03770724.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi 118a]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    39, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 73676, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|ZP_03588886.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
burgdorferi 72a]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.9 bits (56),  Expect =    40, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 73002, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|XP_002369221.1|  hypothetical protein TGME49_085830 [Toxoplasma gondii ME49]
Length=3340

 GENE ID: 7897899 TGME49_085830 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    41, Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 11/36 (30%)

Query  268  RRVEAA--RRA----QELEMEMLSSTSPP-ERTRYS  296
            R  EAA  RRA    QE + E   S SPP E T YS
Sbjct  252  RKSEAAAPRRARLWPQERQAE---SGSPPKE-TKYS  283


 Score = 19.3 bits (38),  Expect =  7547, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  358  MSRRKLS  364
            +SRR LS
Sbjct  595  LSRRRLS  601


 Score = 18.9 bits (37),  Expect = 10701, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  59    VSREK  63
             VSREK
Sbjct  2507  VSREK  2511


 Score = 18.5 bits (36),  Expect = 13464, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  214  IVLRRRR  220
            I L RRR
Sbjct  593  ILLSRRR  599


 Score = 17.2 bits (33),  Expect = 29129, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 13/23 (56%)

Query  267  RR----RVEA---------ARRA  276
            RR    RVEA         A RA
Sbjct  764  RRQLLERVEACRVQGGTEGASRA  786


 Score = 16.8 bits (32),  Expect = 44860, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 2/13 (15%)

Query  213   YI--VLRRRRKRV  223
             Y+  VL R R RV
Sbjct  1921  YVGRVLARERRRV  1933


 Score = 16.8 bits (32),  Expect = 46969, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  222   RVNTKRSSR  230
             RV  KR  R
Sbjct  2423  RVEEKRTAR  2431


 Score = 15.9 bits (30),  Expect = 67209, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 3/12 (25%)

Query  259   SNGSFPVNR-RR  269
             S G FP  R RR
Sbjct  1670  SSGEFP--RLRR  1679


 Score = 15.9 bits (30),  Expect = 71673, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  227  RSSR  230
            RSSR
Sbjct  156  RSSR  159


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  149   KRRVTV  154
              RR TV
Sbjct  2635  RRRLTV  2640


 Score = 15.5 bits (29),  Expect = 91012, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 8/17 (47%), Gaps = 8/17 (47%)

Query  317   STPDS-------PAKPE  326
             STP S       P KPE
Sbjct  1029  STP-SFPVLASLPDKPE  1044


 Score = 15.5 bits (29),  Expect = 91852, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 3/13 (23%)

Query  65    LQTTTNYLIVSLA  77
             +QT   YL  SLA
Sbjct  1776  MQT---YLPASLA  1785


 Score = 15.5 bits (29),  Expect = 92700, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 0/9 (0%)

Query  229   SRAFRAHLR  237
             SRA+ A LR
Sbjct  2019  SRAYVAALR  2027


 Score = 15.5 bits (29),  Expect = 95290, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  61    REKAL  65
             REK L
Sbjct  1509  REKTL  1513


>ref|YP_072486.1|  DNA topoisomerase IV subunit A [Borrelia garinii PBi]
Length=626

 GENE ID: 2957933 parC | DNA topoisomerase IV subunit A [Borrelia garinii PBi]
(10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    42, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 73676, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|ZP_03539758.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
garinii PBr]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    42, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 74356, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|XP_002370718.1|  membrane attachment protein, putative [Toxoplasma gondii ME49]
Length=4900

 GENE ID: 7896811 TGME49_019660 | membrane attachment protein, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    43, Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 10/30 (33%)

Query  266   NRRRVEAARRAQ----------ELEMEMLS  285
             NR  V A  RA           ELEME LS
Sbjct  1370  NRMLVAAEKRARNTVAGLTRLKELEMEALS  1399


 Score = 23.5 bits (48),  Expect =   392, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 1/10 (10%)

Query  59    VSRE-KALQT  67
             V RE KALQT
Sbjct  1589  VAREVKALQT  1598


 Score = 22.3 bits (45),  Expect =   929, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  354   SLKTMSRR  361
              LKTM RR
Sbjct  1009  TLKTMERR  1016


 Score = 19.7 bits (39),  Expect =  5472, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 2/14 (14%)

Query  274  RRAQELEM-E-MLS  285
            RR  ELE  E M+S
Sbjct  691  RRSAELEVAEAMMS  704


 Score = 19.7 bits (39),  Expect =  5472, Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 8/21 (38%)

Query  267   RRRVEAA----RRA----QEL  279
             RR V+AA     RA    Q+L
Sbjct  4786  RRSVDAAAIAFQRATRSEQQL  4806


 Score = 19.7 bits (39),  Expect =  5944, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  264   PVNRRR  269
             PV RRR
Sbjct  3039  PVERRR  3044


 Score = 19.3 bits (38),  Expect =  6397, Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 8/25 (32%)

Query  356  KTMSRR-KLSQQKEKKATQMLAIVL  379
            K M RR K  +Q E      L I+L
Sbjct  349  KVMARRVK--EQTER-----LDIIL  366


 Score = 19.3 bits (38),  Expect =  6576, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  353  TSLKTMSRRKLS  364
            T LK  SRR  S
Sbjct  549  TALKASSRRRAS  560


 Score = 18.9 bits (37),  Expect =  8427, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 5/15 (33%)

Query  270   VEAARR--AQELEME  282
             VE AR   AQ   ME
Sbjct  4060  VEEARKILAQ---ME  4071


 Score = 18.5 bits (36),  Expect = 10899, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  277   QELEME  282
             Q LEME
Sbjct  3117  QHLEME  3122


 Score = 18.5 bits (36),  Expect = 11101, Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query  261  GSF-PVNRRRVEA-ARRAQEL  279
            GSF   NR R +   RR Q L
Sbjct  645  GSFKRLNRQRLQSMQRRKQAL  665


 Score = 18.5 bits (36),  Expect = 12978, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 1/11 (9%)

Query  265   VNRRRVEA-AR  274
             V R RVE  AR
Sbjct  1521  VARHRVEEIAR  1531


 Score = 18.0 bits (35),  Expect = 15740, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  343   IQTM  346
             IQTM
Sbjct  1990  IQTM  1993


 Score = 17.6 bits (34),  Expect = 19804, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query  267   RRRVEAAR-RAQE  278
             RRR   AR R +E
Sbjct  1516  RRRLVVARHRVEE  1528


 Score = 17.6 bits (34),  Expect = 22112, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  147  SSKRRVTVM  155
            SS RR   M
Sbjct  554  SSRRRASGM  562


 Score = 17.6 bits (34),  Expect = 24917, Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 7/18 (38%)

Query  277   QE----LE---MEMLSST  287
             QE    LE    +MLSS 
Sbjct  1746  QEAQTLLEEGNTQMLSSS  1763


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  372   TQML  375
             TQML
Sbjct  1757  TQML  1760


 Score = 17.2 bits (33),  Expect = 31351, Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 9/24 (37%)

Query  219   RRKRVN----TKRS---SRAFRAH  235
             RR RV+    TK S   S AF AH
Sbjct  1029  RRSRVDIEAVTK-SLWES-AFEAH  1050


 Score = 16.8 bits (32),  Expect = 38728, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  11    DDLER  15
             +DLER
Sbjct  2915  NDLER  2919


 Score = 16.8 bits (32),  Expect = 39446, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  274   RRAQELEMEM  283
             RRA  L  EM
Sbjct  3792  RRARSLVREM  3801


 Score = 16.3 bits (31),  Expect = 52444, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  57    MAVSREKAL  65
             M V  +KAL
Sbjct  1693  MLVGKQKAL  1701


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  76    LAVADL  81
             LA ADL
Sbjct  3623  LALADL  3628


 Score = 16.3 bits (31),  Expect = 62446, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  12    DLER  15
             DLER
Sbjct  4211  DLER  4214


 Score = 16.3 bits (31),  Expect = 63022, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 8/11 (72%), Gaps = 3/11 (27%)

Query  57    MAVSR---EKA  64
             +AVSR   +KA
Sbjct  3347  LAVSRAESQKA  3357


 Score = 15.9 bits (30),  Expect = 64191, Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 9/28 (32%), Gaps = 18/28 (64%)

Query  270   VEAAR------------------RAQEL  279
             V+AAR                  RAQ L
Sbjct  3298  VDAARHVRDAKIRVPAYMQGYIARAQNL  3325


 Score = 15.9 bits (30),  Expect = 70368, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  271   EAARRAQEL  279
             + A RA EL
Sbjct  1999  DTAKRAGEL  2007


 Score = 15.9 bits (30),  Expect = 71673, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  271   EAARRAQELE  280
             EAA R  +LE
Sbjct  3967  EAANRLRQLE  3976


 Score = 15.9 bits (30),  Expect = 80027, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  275  RAQEL  279
            RA+EL
Sbjct  2    RAHEL  6


 Score = 15.5 bits (29),  Expect = 85343, Method: Composition-based stats.
 Identities = 4/8 (50%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  275  RAQELEME  282
            RA+E E +
Sbjct  138  RAHEVEVD  145


 Score = 15.5 bits (29),  Expect = 86926, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  269   RVEAARRAQEL  279
             RV+ A R  EL
Sbjct  2563  RVQNAQR--EL  2571


 Score = 15.5 bits (29),  Expect = 98857, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 4/13 (30%)

Query  74   VSLAVAD----LL  82
            VSL +AD    LL
Sbjct  391  VSLHIADRSQTLL  403


>ref|XP_002367413.1|  hypothetical protein TGME49_051740 [Toxoplasma gondii ME49]
Length=1893

 GENE ID: 7901388 TGME49_051740 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    44, Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 8/26 (30%)

Query  288  SPPERTRYSPIPPSH-HQLTLPDPSH  312
            SPP  TR+SP  P H H      PSH
Sbjct  64   SPPN-TRFSPSQPRHGH------PSH  82


 Score = 19.3 bits (38),  Expect =  7758, Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 13/33 (39%)

Query  263  FPVNRR-RVEAARRAQELEMEMLSSTSPPERTR  294
            FPV R    E ARR   L +E        ER R
Sbjct  432  FPVSRHGFLE-ARR---LALE--------ERNR  452


 Score = 18.9 bits (37),  Expect =  9761, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  344  QTMPN  348
            QTMP+
Sbjct  709  QTMPD  713


 Score = 18.9 bits (37),  Expect = 10799, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  269  RVEAARRAQ  277
            RV AAR  Q
Sbjct  942  RVSAARPSQ  950


 Score = 18.5 bits (36),  Expect = 14096, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  271   EAARRAQ  277
             EA RR Q
Sbjct  1436  EAGRREQ  1442


 Score = 16.8 bits (32),  Expect = 41300, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  59    VSREKAL  65
             VSRE  L
Sbjct  1727  VSREDSL  1733


 Score = 16.3 bits (31),  Expect = 47840, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  270   VEAARR  275
             V+A RR
Sbjct  1862  VDAGRR  1867


 Score = 16.3 bits (31),  Expect = 54407, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 7/9 (77%), Gaps = 1/9 (11%)

Query  7    SWYDDDLER  15
            SW D++ ER
Sbjct  523  SWADEE-ER  530


 Score = 15.9 bits (30),  Expect = 75735, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 6/13 (46%), Gaps = 0/13 (0%)

Query  222  RVNTKRSSRAFRA  234
            RV   R S  F A
Sbjct  942  RVSAARPSQPFPA  954


>ref|ZP_03773309.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
sp. SV1]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    44, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 74356, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|ZP_03672150.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
valaisiana VS116]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    45, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


 Score = 15.9 bits (30),  Expect = 82264, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDVNNSKE  536


>ref|YP_709476.1|  DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
 ref|ZP_03436048.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
afzelii ACA-1]
Length=626

 GENE ID: 4227043 parC | DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
(10 or fewer PubMed links)

 Score = 26.5 bits (55),  Expect =    46, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  279  EKLYHYTNCQISISVNLLL  297


>ref|XP_002370287.1|  hypothetical protein TGME49_104930 [Toxoplasma gondii ME49]
Length=384

 GENE ID: 7894108 TGME49_104930 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    47, Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 17/73 (23%)

Query  8    WYDDDLERQNWSRPFNGSDGKADRPHYNYYATLLTLLIAVIVFGNVLVCM---AVSRE--  62
            W ++      W  P++ SD             LL  LI V   G    CM   AV RE  
Sbjct  260  WNENVVVQKAWGSPYDSSD----------TGFLLHTLITVSPSGEASNCMKANAVRRETT  309

Query  63   --KALQTTTNYLI  73
                L+  T Y  
Sbjct  310  DCEPLHEPTLYFM  322


 Score = 17.2 bits (33),  Expect = 32227, Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 0/29 (0%)

Query  344  QTMPNGKTRTSLKTMSRRKLSQQKEKKAT  372
            +  P G     L   S    SQ+ EK A 
Sbjct  331  HAVPFGLALAALLKGSKCTISQEDEKSAA  359


>ref|XP_002366111.1|  PHD-finger domain-containing protein [Toxoplasma gondii ME49]
Length=5306

 GENE ID: 7896128 TGME49_024260 | PHD-finger domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    48, Method: Composition-based stats.
 Identities = 9/11 (81%), Positives = 9/11 (81%), Gaps = 1/11 (9%)

Query  270   VEAARRAQELE  280
             VEA RRAQ LE
Sbjct  1056  VEAERRAQ-LE  1065


 Score = 21.8 bits (44),  Expect =  1379, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 1/17 (5%)

Query  12    DL-ERQNWSRPFNGSDG  27
             DL +RQ W   F   DG
Sbjct  4840  DLRDRQRWTSAFEVTDG  4856


 Score = 20.2 bits (40),  Expect =  3488, Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 7/29 (24%)

Query  10    DDDLERQNWSRPF-NGSD------GKADR  31
             D D  R  W R F  GS+      GK  R
Sbjct  2862  DGDFSRDAWTRGFRSGSETGMGTSGKGAR  2890


 Score = 19.7 bits (39),  Expect =  5038, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 9/20 (45%), Gaps = 6/20 (30%)

Query  141   LY------NTRYSSKRRVTV  154
             LY      N RYS KR   V
Sbjct  1810  LYPPEMAENFRYSEKRKMMV  1829


 Score = 19.7 bits (39),  Expect =  5323, Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 5/20 (25%)

Query  282   EMLSSTSP-PERTRYSPIPP  300
             EM    SP PE  R+S  PP
Sbjct  1562  EM----SPFPELQRFSSAPP  1577


 Score = 19.7 bits (39),  Expect =  5573, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 9/20 (45%), Gaps = 9/20 (45%)

Query  286   STSPPERTRYS-----PIPP  300
             S SPPE    S     P PP
Sbjct  1771  SSSPPE----SVASCLPTPP  1786


 Score = 18.0 bits (35),  Expect = 15885, Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 16/48 (33%), Gaps = 30/48 (62%)

Query  267   RRRVEAARRAQELEMEMLSSTS--PP-----------ERTRYSPIPPS  301
             RRRV             LSS S  PP           +R     +PPS
Sbjct  4891  RRRVS------------LSSGSGGPPYFSGDALSSVKDR-----VPPS  4921


 Score = 17.6 bits (34),  Expect = 22522, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 1/11 (9%)

Query  271   EAARRA-QELE  280
             +A R   QELE
Sbjct  1994  DASRSSPQELE  2004


 Score = 17.6 bits (34),  Expect = 23365, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  266   NRRR  269
             NRRR
Sbjct  1129  NRRR  1132


 Score = 17.6 bits (34),  Expect = 24240, Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 16/43 (37%)

Query  271   EAARR--A--QELEMEMLSSTS--------PPERTRYSPIPPS  301
             E ARR  A  Q L +  L S S         PE      IPPS
Sbjct  1873  ENARRHDAGLQPLSLSPLTSNSATAFFMSVAPE----TEIPPS  1911


 Score = 17.6 bits (34),  Expect = 26088, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  360   RRKLSQQ  366
             RR L QQ
Sbjct  4558  RRSLDQQ  4564


 Score = 17.2 bits (33),  Expect = 29943, Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 6/23 (26%)

Query  258   KSNGSFPVN--RR---RVEAARR  275
             KS G F V   R    R E  RR
Sbjct  4538  KS-GAFHVSCARQLGCRMETQRR  4559


 Score = 17.2 bits (33),  Expect = 32825, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  317  STPDSP  322
            STP SP
Sbjct  787  STPSSP  792


 Score = 16.8 bits (32),  Expect = 35328, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 1/10 (10%)

Query  358   MSRRKLSQQK  367
             M R KL QQ 
Sbjct  4577  MNR-KLLQQR  4585


 Score = 16.8 bits (32),  Expect = 37330, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 1/10 (10%)

Query  359   SRRKLSQQKE  368
              RR LS +KE
Sbjct  2179  TRRELS-EKE  2187


 Score = 16.8 bits (32),  Expect = 37675, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 4/7 (57%), Gaps = 0/7 (0%)

Query  15    RQNWSRP  21
             R NW  P
Sbjct  3433  RRNWEKP  3439


 Score = 16.8 bits (32),  Expect = 41300, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  218   RRRKRV  223
             RR  RV
Sbjct  2461  RRQRRV  2466


 Score = 16.8 bits (32),  Expect = 41300, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  299   PPSH  302
             PPSH
Sbjct  3394  PPSH  3397


 Score = 16.8 bits (32),  Expect = 45692, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  57    MAVSREK  63
             M + REK
Sbjct  2343  MSIEREK  2349


 Score = 16.3 bits (31),  Expect = 55927, Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 20/39 (51%)

Query  272   AARRAQEL------------EMEM--LSSTSPPER--TR  294
             AA R Q L            E E   LSST    R  TR
Sbjct  3461  AASREQGLSGSHAAHKEPQKEAEVSCLSST----RDMTR  3495


 Score = 16.3 bits (31),  Expect = 59097, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  305   LTLPDPS  311
             L LP PS
Sbjct  4814  LNLPSPS  4820


 Score = 16.3 bits (31),  Expect = 63022, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 4/13 (30%)

Query  268   RRVEA----ARRA  276
             R VE     ARRA
Sbjct  2847  RCVEPEEDDARRA  2859


 Score = 15.9 bits (30),  Expect = 63604, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  419  SAVNP  423
            SA+NP
Sbjct  56   SAINP  60


 Score = 15.9 bits (30),  Expect = 65382, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  306   TLPDPSHHG  314
              L DPS+ G
Sbjct  4003  SLSDPSQEG  4011


 Score = 15.9 bits (30),  Expect = 75735, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  315  LHSTPDSPAK  324
            L S P SP K
Sbjct  509  LPSGPQSPSK  518


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 5/11 (45%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  280   EMEMLSSTSPP  290
             E++  SS  PP
Sbjct  1568  ELQRFSSAPPP  1578


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  286   STSPP  290
             ST PP
Sbjct  1682  STAPP  1686


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  287   TSPPE  291
             T PPE
Sbjct  1784  TPPPE  1788


 Score = 15.5 bits (29),  Expect = 89355, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 8/16 (50%), Gaps = 5/16 (31%)

Query  254  TVIMKSNGS-----FP  264
            TV  K NGS     FP
Sbjct  907  TVHKKWNGSMRLPAFP  922


 Score = 15.5 bits (29),  Expect = 98857, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 0/13 (0%)

Query  360   RRKLSQQKEKKAT  372
             RR   Q  E KAT
Sbjct  3249  RRHRAQSREEKAT  3261


>ref|XP_002371518.1|  hypothetical protein TGME49_095790 [Toxoplasma gondii ME49]
Length=1386

 GENE ID: 7897865 TGME49_095790 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    49, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 0/13 (0%)

Query  267   RRRVEAARRAQEL  279
             RR  EAAR  QE+
Sbjct  1280  RRQAEAARKQQEM  1292


 Score = 21.0 bits (42),  Expect =  2244, Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 11/25 (44%)

Query  301  SHHQLTLPDPSH--HGLHSTPDSPA  323
            SH    LP PS   H     PDSPA
Sbjct  860  SH----LP-PSRSAH----APDSPA  875


 Score = 19.7 bits (39),  Expect =  4553, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  297  PIPPS  301
            PIPPS
Sbjct  548  PIPPS  552


 Score = 18.0 bits (35),  Expect = 15453, Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 3/16 (18%)

Query  220  RKRVNTK--RS-SRAF  232
             K V TK  RS SR F
Sbjct  450  KKSVTTKLSRSLSRLF  465


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 3/18 (16%)

Query  354  SLKTMSR-RKLSQQKEKK  370
            SL  + R R L QQK KK
Sbjct  293  SLESLFRGRSL-QQK-KK  308


 Score = 16.3 bits (31),  Expect = 56964, Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 12/28 (42%)

Query  265   VNRR-----RVEAARR-A-----QELEM  281
             V R      R EA RR A     Q+ EM
Sbjct  1266  VKRKKEELKREEAQRRQAEAARKQQ-EM  1292


 Score = 15.9 bits (30),  Expect = 72335, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 1/9 (11%)

Query  322  PAK-PEKNG  329
            P K PE NG
Sbjct  97   PEKRPEQNG  105


 Score = 15.9 bits (30),  Expect = 72335, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  267  RR-R-VEAARR  275
            RR R VE  RR
Sbjct  320  RRSRSVECGRR  330


 Score = 15.5 bits (29),  Expect = 90180, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  269   RVEAARRA  276
             RV+  RRA
Sbjct  1033  RVQQKRRA  1040


>ref|NP_044506.1|  large tegument protein [Human herpesvirus 2]
Length=3122

 GENE ID: 1487322 UL36 | complexed with tegument protein UL37;
ubiquitin-specific protease (N-terminal region) [Human herpesvirus 2]
(10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    49, Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 2/14 (14%)

Query  267   RRRVEAARRAQELE  280
             RRRV+A RR   LE
Sbjct  1719  RRRVDALRRS--LE  1730


 Score = 21.0 bits (42),  Expect =  1885, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  274   RRAQELE  280
             RRA ELE
Sbjct  1301  RRADELE  1307


 Score = 19.7 bits (39),  Expect =  5178, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 2/13 (15%)

Query  63    KALQTTTNYLIVS  75
              ALQ TTN   VS
Sbjct  1765  RALQDTTN--TVS  1775


 Score = 19.3 bits (38),  Expect =  6054, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 6/14 (42%)

Query  269  RVEA-ARRAQELEM  281
            RVEA AR     EM
Sbjct  717  RVEAEAR-----EM  725


 Score = 18.9 bits (37),  Expect =  8123, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  186   NPAFVV  191
              PAFVV
Sbjct  1106  HPAFVV  1111


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 6/17 (35%)

Query  273   AR-----RAQELEMEML  284
             AR     RA+ LE  ML
Sbjct  991   ARSRLRERAHALE-AML  1006


 Score = 17.2 bits (33),  Expect = 31064, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 2/8 (25%)

Query  318  TPDSPAKP  325
            TP  PAKP
Sbjct  337  TP--PAKP  342


 Score = 17.2 bits (33),  Expect = 32227, Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 10/20 (50%)

Query  292  RTRYS---P-------IPPS  301
            R RYS   P        PPS
Sbjct  387  RARYSTGLPKRRRPTWTPPS  406


 Score = 16.8 bits (32),  Expect = 39446, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  318   TPDSP  322
             TP+SP
Sbjct  2962  TPESP  2966


 Score = 16.8 bits (32),  Expect = 42846, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  151   RVTVM  155
             RVT M
Sbjct  2310  RVTAM  2314


 Score = 16.8 bits (32),  Expect = 44860, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  287   TSPPERTR  294
             T P  RTR
Sbjct  2877  TKPAARTR  2884


 Score = 16.3 bits (31),  Expect = 57490, Method: Composition-based stats.
 Identities = 5/10 (50%), Positives = 6/10 (60%), Gaps = 1/10 (10%)

Query  220   RKRVNT-KRS  228
             R RV+   RS
Sbjct  1719  RRRVDALRRS  1728


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  316   HSTPDS  321
             H TPD 
Sbjct  1093  HPTPDT  1098


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  319   PDSPA-KP  325
             P SPA KP
Sbjct  2872  PQSPATKP  2879


 Score = 15.9 bits (30),  Expect = 63604, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  407   LYSAF  411
             LYSA+
Sbjct  1874  LYSAY  1878


 Score = 15.9 bits (30),  Expect = 70368, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 3/11 (27%)

Query  264  PVNRRRVEAAR  274
            PV R R   AR
Sbjct  382  PVGRHR---AR  389


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  319   PDSPAKPE  326
             PD P  PE
Sbjct  2710  PDQPPTPE  2717


 Score = 15.5 bits (29),  Expect = 87728, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 7/8 (87%), Gaps = 0/8 (0%)

Query  270   VEAARRAQ  277
             V+AA RA+
Sbjct  1161  VDAAVRAH  1168


 Score = 15.5 bits (29),  Expect = 96170, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  77    AVADLLV  83
             A ADL V
Sbjct  1225  AAADLVV  1231


 Score = 15.5 bits (29),  Expect = 97953, Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 10/28 (35%), Gaps = 10/28 (35%)

Query  268  RRVEAARRAQELEMEMLSSTSPPE-RTR  294
            R  EAA    EL          PE R R
Sbjct  976  RAMEAAKMTAEL---------APEARSR  994


>ref|XP_002371733.1|  rhoptry neck protein 2 [Toxoplasma gondii ME49]
Length=1404

 GENE ID: 7895166 TGME49_100100 | rhoptry neck protein 2
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    50, Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 6/105 (5%)

Query  228  SSRAFR--AHLRAPLKG-NCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEML  284
            S R FR     R   K  +   PED+K  T       S     R   A  R +   +  L
Sbjct  62   SPRTFRPTGYQRIEVKTVDEELPEDLKVYTASTRGSSSRTFEVR--NAGGRQEGFTLSVL  119

Query  285  SSTSP-PERTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKN  328
                P P         P   Q T       G     + P  PE N
Sbjct  120  TAGGPLPHGSWSWSGTPPEVQTTGGSQISFGWVPDTETPSLPERN  164


 Score = 21.4 bits (43),  Expect =  1568, Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query  366  QKEKKAT--QMLAIVLGVFIICWLPFFITH  393
            +KE   T   +    LG + IC L     H
Sbjct  309  EKERSPTSKRLVGMQLGLYLICKLAALFGH  338


>ref|XP_002367464.1|  eukaryotic translation initiation factor 3 subunit 10, putative 
[Toxoplasma gondii ME49]
Length=1033

 GENE ID: 7894442 TGME49_001680 | eukaryotic translation initiation factor 3
subunit 10, putative [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    51, Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 14/77 (18%)

Query  263  FPVNRRRVEAA-----------RRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPS  311
              V R R E             R  +E     L      +R R   I   + QL L    
Sbjct  847  IEVERKRMEEEQKKYLEQLEKKRQEEEAKAKRLAEQAEKQRQRELEIEEKQRQLDLEASA  906

Query  312  HHGLHSTP-DSPAKPEK  327
               L S P   PA P+K
Sbjct  907  --ALRSAPRAAPASPQK  921


 Score = 18.9 bits (37),  Expect =  9496, Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 2/26 (7%)

Query  343  IQTMPNGKTRTSLKTMSRRKLSQQKE  368
            IQ +  GK    L      KL Q KE
Sbjct  84   IQSL--GKVIAELRSRAEQKLTQAKE  107


>ref|ZP_03673199.1|  DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
Length=422


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    53, Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  17   TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  74

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C I +  + ++
Sbjct  75   EKLYHYTNCQISISVNLLL  93


 Score = 16.3 bits (31),  Expect = 61875, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  321  CALVYDINNSKE  332


>ref|XP_002365300.1|  hypothetical protein TGME49_061680 [Toxoplasma gondii ME49]
Length=1464

 GENE ID: 7894888 TGME49_061680 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.5 bits (55),  Expect =    54, Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 7/31 (22%)

Query  273  ARR---AQ---ELEMEMLSSTS-PPERTRYS  296
            A R   AQ   E+ M ML S S P ER  YS
Sbjct  397  AHREKDAQLFCEMLMRMLPSSSLPSERALYS  427


 Score = 17.6 bits (34),  Expect = 21314, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  56   CMAVSR  61
            CM V R
Sbjct  848  CMEVAR  853


 Score = 17.6 bits (34),  Expect = 25379, Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 11/29 (37%), Gaps = 8/29 (27%)

Query  266  NRRRVEAARRAQEL---EMEMLSSTSPPE  291
             RRR   A     L   E EM S    PE
Sbjct  251  HRRRTGDA-----LGEEEVEMTSPAKRPE  274


 Score = 17.2 bits (33),  Expect = 34053, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  365  QQKEKK  370
            +QK+KK
Sbjct  918  EQKDKK  923


 Score = 16.8 bits (32),  Expect = 37675, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  119  TASILNL  125
            TA IL L
Sbjct  92   TARILSL  98


 Score = 15.9 bits (30),  Expect = 63604, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  271  EAARR  275
            E ARR
Sbjct  822  ETARR  826


 Score = 15.9 bits (30),  Expect = 80027, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  248  EDMKL  252
            ED+KL
Sbjct  301  EDLKL  305


>ref|XP_002366641.1|  hypothetical protein TGME49_040220 [Toxoplasma gondii ME49]
Length=1518

 GENE ID: 7893923 TGME49_040220 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    56, Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 11/26 (42%)

Query  266   NRR-----RVE------AARRAQELE  280
              RR     RVE        RRAQE E
Sbjct  1427  HRRGAELLRVEPERPGNSDRRAQEIE  1452


 Score = 23.1 bits (47),  Expect =   441, Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 3/18 (16%)

Query  288  SPPERTRYSPIPPSHHQL  305
            SP E    S +PP H QL
Sbjct  42   SPAES---SSVPPTHKQL  56


 Score = 17.2 bits (33),  Expect = 29398, Method: Composition-based stats.
 Identities = 4/8 (50%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  267   RRRVEAAR  274
             RRR++  R
Sbjct  1078  RRRIQEER  1085


 Score = 16.3 bits (31),  Expect = 47403, Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 13/34 (38%)

Query  267  RRRVEA--------ARRAQELEMEMLSSTSPPER  292
            RR  EA         R    LE E+L S S  ER
Sbjct  457  RRMAEAVEVQASTLTR----LE-ELLDSQSRLER  485


 Score = 15.9 bits (30),  Expect = 67829, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 2/10 (20%)

Query  275  RAQ--ELEME  282
            R Q  ELE E
Sbjct  643  RSQLAELESE  652


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  296  SPIPPS  301
            SP+ PS
Sbjct  17   SPVAPS  22


>ref|XP_002367106.1|  ATPase, AAA family domain-containing protein [Toxoplasma gondii 
ME49]
Length=3668

 GENE ID: 7897951 TGME49_047390 | ATPase, AAA family domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    57, Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 10/23 (43%)

Query  265   VNR-----RRVEAARRAQELEME  282
             V+R     RRV     AQELE E
Sbjct  1230  VDRHLESLRRV-----AQELERE  1247


 Score = 18.0 bits (35),  Expect = 15312, Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 5/16 (31%)

Query  271   EAARRAQEL-----EM  281
             E A R +EL     EM
Sbjct  1728  EEASREEELLNIAQEM  1743


 Score = 18.0 bits (35),  Expect = 17096, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  57    MAVSREKAL  65
             MA  REK L
Sbjct  1568  MAPCREKNL  1576


 Score = 17.6 bits (34),  Expect = 21709, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 4/12 (33%)

Query  60    SREK----ALQT  67
             SREK    AL T
Sbjct  3434  SREKRQDGALDT  3445


 Score = 17.6 bits (34),  Expect = 22112, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  400   DCNI  403
             DCNI
Sbjct  1447  DCNI  1450


 Score = 17.6 bits (34),  Expect = 22522, Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 21/39 (53%)

Query  264   PVNR-RRVE-----------AA-------RR-AQELEME  282
             PV R RR E           AA       RR A +LE E
Sbjct  3279  PV-RGRRLELPLKLLVPCVHAAMVAFVEKRRQARQLETE  3316


 Score = 17.6 bits (34),  Expect = 23798, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  218  RRRKRV  223
            R R RV
Sbjct  995  RKRRRV  1000


 Score = 17.2 bits (33),  Expect = 34685, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 3/14 (21%)

Query  4     LNL--SWYDDDLER  15
             L L  SW  DD ER
Sbjct  3596  LELLSSWLQDD-ER  3608


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  387   LPFFIT  392
             L FFI 
Sbjct  3365  LSFFIS  3370


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  372   TQMLAIVLG  380
              Q+LA  LG
Sbjct  1816  SQLLATLLG  1824


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 4/9 (44%), Positives = 7/9 (77%), Gaps = 2/9 (22%)

Query  8     WYDDDLERQ  16
             W  ++LER+
Sbjct  3228  W--NELERE  3234


 Score = 15.9 bits (30),  Expect = 63604, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 2/9 (22%)

Query  362  KL--SQQKE  368
            KL  S QKE
Sbjct  519  KLDKSRQKE  527


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  271   EAARR  275
             EA RR
Sbjct  2745  EAPRR  2749


 Score = 15.5 bits (29),  Expect = 86926, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  271   EAARR  275
             EA RR
Sbjct  1386  EAGRR  1390


>ref|XP_002366775.1|  hypothetical protein TGME49_042450 [Toxoplasma gondii ME49]
Length=1629

 GENE ID: 7894743 TGME49_042450 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    59, Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 9/26 (34%)

Query  214   IVLRR--R--RKRVNTKRS-----SR  230
             +VLRR  R  RK V T RS     SR
Sbjct  1389  VVLRRVERTERKAVATNRSLRTRSSR  1414


 Score = 18.9 bits (37),  Expect =  9238, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  226  KRSSR  230
            KRSSR
Sbjct  770  KRSSR  774


 Score = 18.5 bits (36),  Expect = 14490, Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 10/23 (43%)

Query  309  DPSHH----------GLHSTPDS  321
            D S+H           LH T DS
Sbjct  764  DASQHQKRSSRSLASALHATRDS  786


 Score = 16.3 bits (31),  Expect = 55416, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  159  VWVLSF  164
            VW L F
Sbjct  552  VWALRF  557


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  215   VLRRR  219
             VL RR
Sbjct  1243  VLHRR  1247


 Score = 15.9 bits (30),  Expect = 80766, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  283  MLSSTSPP  290
            +L S SPP
Sbjct  139  LLFSASPP  146


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 2/14 (14%)

Query  70   NYLIVSLAVADLLV  83
            N+L   L   DLLV
Sbjct  649  NFL--TLNHGDLLV  660


>ref|XP_002369045.1|  hypothetical protein TGME49_036930 [Toxoplasma gondii ME49]
Length=5660

 GENE ID: 7899110 TGME49_036930 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    60, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 0/11 (0%)

Query  267   RRRVEAARRAQ  277
             RRRV+  RRA+
Sbjct  2180  RRRVQSQRRAE  2190


 Score = 20.2 bits (40),  Expect =  3619, Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 13/34 (38%)

Query  266   NRR----RVEAARRAQELEMEMLSSTSPPER-TR  294
             +RR    R E  RR +E E E   ST    R TR
Sbjct  5073  DRREETGRGE--RRTHETEKE--GST----RGTR  5098


 Score = 20.2 bits (40),  Expect =  4004, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 4/16 (25%)

Query  273   ARRAQELEMEMLSSTS  288
             ARR +EL    L S S
Sbjct  3729  ARRCEEL----LTSSS  3740


 Score = 18.5 bits (36),  Expect = 12169, Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 5/20 (25%)

Query  193  SSI---VSFY--VPFIVTLL  207
            SSI   VSF+   P I  LL
Sbjct  88   SSIPAEVSFFRRLPLIGRLL  107


 Score = 18.0 bits (35),  Expect = 17736, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  271   EAARRA  276
             EA RRA
Sbjct  5175  EAVRRA  5180


 Score = 17.6 bits (34),  Expect = 20357, Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 12/28 (42%)

Query  201   PFI---VTLLVYIKIYIVLRRRR---KR  222
             PF+   V LL     Y + R RR   KR
Sbjct  4331  PFVRQAV-LL-----YLIQRMRRALEKR  4352


 Score = 17.6 bits (34),  Expect = 22522, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  163   SFTISC  168
             SF +SC
Sbjct  4418  SFSVSC  4423


 Score = 17.6 bits (34),  Expect = 24917, Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 5/15 (33%)

Query  119  TASILNLCAISIDRY  133
            T S+LN     +D Y
Sbjct  915  TTSVLN-----VDQY  924


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  344   QTMPNGKTRTS  354
             QT+  GK R S
Sbjct  5282  QTLRAGKSRPS  5292


 Score = 17.2 bits (33),  Expect = 29669, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  267   RRRV  270
             RRRV
Sbjct  1666  RRRV  1669


 Score = 17.2 bits (33),  Expect = 33742, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  216   LRRR  219
             LRRR
Sbjct  1845  LRRR  1848


 Score = 16.8 bits (32),  Expect = 46540, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  13    LERQ  16
             LERQ
Sbjct  3255  LERQ  3258


 Score = 16.3 bits (31),  Expect = 58556, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  38    ATLLTL  43
             ATLL L
Sbjct  2526  ATLLVL  2531


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 3/11 (27%)

Query  75   SLAV---ADLL  82
            SLAV   A LL
Sbjct  311  SLAVSSHAGLL  321


 Score = 15.9 bits (30),  Expect = 65382, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  296   SPIPPS  301
             SP PPS
Sbjct  1962  SPSPPS  1967


 Score = 15.9 bits (30),  Expect = 66594, Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 4/19 (21%)

Query  297  PIPPSHHQLTLPDPSHHGL  315
            PI    H L L   SH GL
Sbjct  306  PI----HGLSLAVSSHAGL  320


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  56    CMAVSRE  62
             C+AV R+
Sbjct  2244  CLAVDRQ  2250


 Score = 15.9 bits (30),  Expect = 79295, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  361   RKLSQQKE  368
             R L  QKE
Sbjct  4130  RSLAAQKE  4137


 Score = 15.9 bits (30),  Expect = 80027, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 14/23 (60%)

Query  75    SLAVADLLVATLVMPWVVYLEVV  97
             SLAV    VA          EVV
Sbjct  1823  SLAV----VA----------EVV  1831


 Score = 15.9 bits (30),  Expect = 81511, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 6/14 (42%)

Query  75    SL--AVADLLVATL  86
             SL  AV    VATL
Sbjct  5228  SLDYAV----VATL  5237


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  217   RRRRK  221
             RR RK
Sbjct  1295  RRSRK  1299


 Score = 15.5 bits (29),  Expect = 86926, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  296   SPIPPS  301
             SP+ PS
Sbjct  3440  SPVSPS  3445


 Score = 15.5 bits (29),  Expect = 89355, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  136   VAMPML  141
             VA+P+L
Sbjct  1269  VALPLL  1274


 Score = 15.5 bits (29),  Expect = 89355, Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 8/18 (44%), Gaps = 8/18 (44%)

Query  269   RV-----EAAR---RAQE  278
             RV     EA R   R QE
Sbjct  3670  RVQEVPAEARRREARTQE  3687


 Score = 15.5 bits (29),  Expect = 96170, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  354   SLKTMSRR  361
             SLK   RR
Sbjct  1289  SLKKANRR  1296


 Score = 15.5 bits (29),  Expect = 97953, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  221   KRVNTKRSS  229
             K V   RSS
Sbjct  3387  KKVGATRSS  3395


 Score = 15.5 bits (29),  Expect = 97953, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  320   DSPAKPE  326
             + PAK E
Sbjct  4158  EAPAKSE  4164


>ref|ZP_03435942.1|  phosphatidyltransferase [Borrelia afzelii ACA-1]
Length=234

 Score = 26.1 bits (54),  Expect =    62, Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query  108  DIFVTLDVMMCTASILNLCAISIDRYTA-VAMPMLYNTRYSSKRRVTVMISIVWVLSFTI  166
            +IFV L++        NL   SI   T  +     Y       R +T+   I+  L F I
Sbjct  136  NIFVILNIIFKIEQTTNLIMMSICIITSFIPIKFIYPSKTKELRKITIPLTIISCLIFVI  195

Query  167  SCPLLFGLNNADQNECIIANPAFV---VYSSIVSFYVPF  202
            S    F    A+     IA    +   VY    S Y  +
Sbjct  196  SI---FSELSAEALK--IAKTVLILYFVYLTLASIYLTY  229


>ref|ZP_03773341.1|  leucyl-tRNA synthetase [Borrelia sp. SV1]
Length=840

 Score = 26.1 bits (54),  Expect =    64, Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 47/150 (31%), Gaps = 37/150 (24%)

Query  297  PIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKN-GHAKDHPKIAKIFEIQTMPN--GKTRT  353
            P       L LP+        T +SP    K+    KD      I E  TMP   G    
Sbjct  451  PLEENNLPLKLPEIANYKPSGTGESPLSRIKDWVNVKD---MDLIRETNTMPQWAGSCWY  507

Query  354  SLKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLP--FFITHILNIHCDCNIPPVLYSAF  411
             L  +      +   KK            I  W+P   +I        +  +   LYS F
Sbjct  508  YLRYLDPKNSKEFANKKK-----------IEYWMPVDLYIGG-----AEHTVLHLLYSRF  551

Query  412  TW------LGYVNSA------VNPIIYTTF  429
             W      LGYVN        +N  I T F
Sbjct  552  -WHKVLYDLGYVNTKEPFKKLINQGIITSF  580


>ref|XP_002371051.1|  hypothetical protein TGME49_013020 [Toxoplasma gondii ME49]
Length=1392

 GENE ID: 7893632 TGME49_013020 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    65, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 9/10 (90%), Gaps = 0/10 (0%)

Query  261   GSFPVNRRRV  270
             GS PV+RRRV
Sbjct  1110  GSRPVDRRRV  1119


 Score = 24.4 bits (50),  Expect =   200, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  215   VLRRRRKRVN  224
             VLRRRR  V+
Sbjct  1258  VLRRRRESVD  1267


 Score = 23.5 bits (48),  Expect =   335, Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 3/13 (23%)

Query  271  EAARRA---QELE  280
            EAARRA   QE E
Sbjct  762  EAARRADATQETE  774


 Score = 20.2 bits (40),  Expect =  4231, Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 9/33 (27%)

Query  285  SSTSPPER--TR---YSPIPPSHHQLTLPDPSH  312
            S  S P R  TR    SP  P      LP+P H
Sbjct  650  STVSRPARELTRGMRASPRAPG----VLPEPTH  678


 Score = 18.0 bits (35),  Expect = 15740, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  267  RRRVEAAR  274
            RR VE  R
Sbjct  728  RRSVEVSR  735


 Score = 16.8 bits (32),  Expect = 35328, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  149   KRRVTV  154
              RRV V
Sbjct  1116  RRRVSV  1121


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 4/7 (57%), Gaps = 0/7 (0%)

Query  126   CAISIDR  132
             C I I R
Sbjct  1305  CGIAIQR  1311


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  303  HQLTLP  308
            HQ  LP
Sbjct  272  HQVSLP  277


>ref|XP_002366348.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=2563

 GENE ID: 7897602 TGME49_026950 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    65, Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 23/54 (42%)

Query  285   SSTS---PPERTRYSPIPPSHHQLT----L-PDPSHHGLHST-----PDSPAKP  325
             SSTS   PP+ T      PS   L     L PDP    L ST     PD P KP
Sbjct  2024  SSTSAPLPPDPTK-----PS---LSTSAPLPPDPTKPSL-STSAPLPPD-PTKP  2067


 Score = 22.7 bits (46),  Expect =   766, Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 31/58 (53%)

Query  285   SSTS---PPERTRYS-----PIPPSHHQLTLPDP----SHHGLHST-----PDSPAKP  325
             SSTS   PP+ T  S     P P        PDP    S     ST     PD P KP
Sbjct  1979  SSTSAPLPPDPTKPSSSTSAPLP--------PDPTKPSS-----STSAPLPPD-PTKP  2022


 Score = 21.4 bits (43),  Expect =  1784, Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 6/24 (25%)

Query  3    PLNLSWY--DDDL---ERQNWSRP  21
            PL L W+  D DL   E  +W  P
Sbjct  407  PLALAWFVPDADLSTGE-DDWEKP  429


 Score = 20.6 bits (41),  Expect =  2798, Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 28/49 (57%)

Query  285   SSTS---PPERTRYSPIPPSHHQLTLPDPSHHGLHST-----PDSPAKP  325
             SSTS   PP+ T     P S               ST     PD P KP
Sbjct  1934  SSTSAPLPPDPTK----PSS---------------STSAPLPPD-PTKP  1962


 Score = 20.6 bits (41),  Expect =  2930, Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 23/52 (44%)

Query  287   TS---PPERTRYSPIPPSHHQLT----LP-DPSHHGLHST-----PDSPAKP  325
             TS   PP+ T      PS   L     LP DP    L ST     PD P KP
Sbjct  1891  TSAPLPPDPTK-----PS---LSTSAPLPPDPTKPSL-STSAPLPPD-PTKP  1932


 Score = 19.7 bits (39),  Expect =  5889, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 3/10 (30%)

Query  285   SSTS---PPE  291
             SSTS   PPE
Sbjct  2189  SSTSAPRPPE  2198


 Score = 18.9 bits (37),  Expect = 10314, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 4/15 (26%)

Query  361   RKLSQ---QK-EKKA  371
             R LSQ   Q  EKKA
Sbjct  2251  RELSQPELQTSEKKA  2265


 Score = 18.0 bits (35),  Expect = 16480, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  316  HSTPDSP  322
            HST D P
Sbjct  608  HSTTDTP  614


 Score = 18.0 bits (35),  Expect = 17900, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  360   RRKLSQQ  366
             RRKL  Q
Sbjct  1525  RRKLRRQ  1531


 Score = 18.0 bits (35),  Expect = 18065, Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 22/46 (47%)

Query  285   SSTS---PPERTR-YSPI-PPSHHQLTLPDPSHHGLHSTPDSPAKP  325
             SSTS   PP  T   S I  P      LP          PD P KP
Sbjct  2129  SSTSAPLPPNPTKPSSSISAP------LP----------PD-PTKP  2157


 Score = 17.6 bits (34),  Expect = 22940, Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 14/35 (40%)

Query  297   PIPPSHHQLTLPDPSHHGLHSTPD--SPAKPEKNG  329
             P PPS        PS   L   PD     KP K+G
Sbjct  1484  PLPPS-------GPSR--L---PDVAGAEKPAKDG  1506


 Score = 17.2 bits (33),  Expect = 31640, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  59   VSREKA  64
            VSRE A
Sbjct  346  VSRETA  351


 Score = 16.8 bits (32),  Expect = 45274, Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 25/55 (45%)

Query  285   SSTS---PPERTRYSPIPPSHHQLTL-------PDPSHHGLHST----PDSPAKP  325
             SSTS   P + T      PS     L       PDP    L       PD P KP
Sbjct  1859  SSTSALLPHDPTK-----PS-----LFTSAPLPPDPTKPSLFTSAPLPPD-PTKP  1902


 Score = 16.3 bits (31),  Expect = 48727, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  74    VSLAVA  79
             VSL VA
Sbjct  2495  VSLEVA  2500


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  169  PLLF  172
            PLLF
Sbjct  67   PLLF  70


 Score = 16.3 bits (31),  Expect = 63022, Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 22/73 (30%), Gaps = 46/73 (63%)

Query  285   SSTS------------------PPERTRYS-----PIPPSHHQLTLPDP----SHHGLHS  317
             SSTS                  PP+ T  S     P P        PDP    S     S
Sbjct  2069  SSTSAPLPPDPSKPSSSTSAPLPPDPTKPSSSTSAPLP--------PDPTKPSS-----S  2115

Query  318   T-----PDSPAKP  325
             T     PD P KP
Sbjct  2116  TSAPLPPD-PTKP  2127


 Score = 15.9 bits (30),  Expect = 73676, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 1/6 (16%)

Query  219  RRK-RV  223
            RRK RV
Sbjct  359  RRKIRV  364


>ref|ZP_03540540.1|  cation diffusion facilitator family transporter [Borrelia garinii 
Far04]
Length=444

 Score = 26.1 bits (54),  Expect =    68, Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 37/124 (29%), Gaps = 19/124 (15%)

Query  169  PLLFGLNNADQNECIIANPAFVV-----------YSSIVSFYVPFIVT---LLVYIKIYI  214
             LL  L  AD N CI                   +  I S ++ FI+    L V I    
Sbjct  314  QLLLALASADKN-CIFSHGGITLSLLLATYMWSGFDKIMSIFIGFIIIKEGLNVIINNAN  372

Query  215  VLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVI---MKSNGSFPVNRRRVE  271
             L      ++ KRS       L    K    H +  KL   I   + S   F       +
Sbjct  373  NLLSKQN-IDLKRSVKDTLKNLNINFKTLNFHNQGNKLVLYIKINLNSENEFQSFINKTQ  431

Query  272  AARR  275
              R 
Sbjct  432  NIRK  435


>ref|XP_002364879.1|  ankyrin repeat-containing protein [Toxoplasma gondii ME49]
Length=1158

 GENE ID: 7896712 TGME49_055510 | ankyrin repeat-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    68, Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 24/89 (26%), Gaps = 19/89 (21%)

Query  207  LVYIKIY-----IVLRRRRKRVNTKRSSR--AFRAHLRAP----------LKGNCTHPED  249
            LVYI          LRRR        S    A R   R P          L GN T P  
Sbjct  741  LVYIEMEDGEAKKALRRRARQKHSSSSGAEAAPRLPHRTPAAASGRENRQLAGNSTRP--  798

Query  250  MKLCTVIMKSNGSFPVNRRRVEAARRAQE  278
            M             P    R E     QE
Sbjct  799  MNAPEGARGPASRRPGGKQRPEGSAKTQE  827


 Score = 16.8 bits (32),  Expect = 43641, Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 5/33 (15%)

Query  112  TLDVMMCTASILNLCAISIDRYTAVAMPMLYNT  144
             L      AS    CA     YT  AM     T
Sbjct  877  ALSSKSSGASTVGGCA-----YTPLAMAIDAET  904


>ref|ZP_03672506.1|  conserved hypothetical integral membrane protein [Borrelia valaisiana 
VS116]
Length=451

 Score = 26.1 bits (54),  Expect =    68, Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 37/124 (29%), Gaps = 19/124 (15%)

Query  169  PLLFGLNNADQNECIIANPAFVV-----------YSSIVSFYVPFIVT---LLVYIKIYI  214
             LL  L  AD N CI                   +  I S ++ FI+    L V I    
Sbjct  314  QLLLALASADKN-CIFSHGGITLSLLLATYMWSGFDKIMSIFIGFIIIKEGLNVIINNAN  372

Query  215  VLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVI---MKSNGSFPVNRRRVE  271
             L      ++ KRS       L    K    H +  KL   I   + S   F       +
Sbjct  373  NLLSKQN-IDLKRSVKDTLKNLNINFKTLNFHNQGNKLVLYIKINLNSENEFQSFINKTQ  431

Query  272  AARR  275
              R 
Sbjct  432  NIRK  435


>ref|XP_002369623.1|  hypothetical protein TGME49_008400 [Toxoplasma gondii ME49]
Length=2024

 GENE ID: 7896312 TGME49_008400 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    70, Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 6/24 (25%)

Query  222   RVNTKRSS--RA----FRAHLRAP  239
             R +  RSS   A    FRAHL  P
Sbjct  1772  RLDSRRSSVKSAEFVSFRAHLSSP  1795


 Score = 16.3 bits (31),  Expect = 49177, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  274   RRAQELEME  282
             R   ELE E
Sbjct  1009  RQSMELEVE  1017


 Score = 15.9 bits (30),  Expect = 77852, Method: Composition-based stats.
 Identities = 3/6 (50%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  10   DDDLER  15
            +D++ER
Sbjct  252  EDEMER  257


 Score = 15.9 bits (30),  Expect = 79295, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 1/13 (7%)

Query  269  RVEAARRAQ-ELE  280
            R E  RR Q  LE
Sbjct  533  RGESRRRGQKNLE  545


>ref|XP_002368762.1|  sec7 domain-containing protein [Toxoplasma gondii ME49]
Length=3892

 GENE ID: 7900670 TGME49_066830 | sec7 domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    70, Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query  258   KSNGSFPVNRR----RVE-AARRAQEL--EMEMLSSTSPPER-TR  294
             K NG FP   R    R+E  AR  QEL  +   L S  P +R TR
Sbjct  1472  KGNGAFPESGRGEMSRIECPARESQELPADAAPLKSPTPRDRATR  1516


 Score = 19.3 bits (38),  Expect =  6280, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  359  SRRKLSQ  365
            SRR LSQ
Sbjct  459  SRRGLSQ  465


 Score = 18.9 bits (37),  Expect =  8583, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  229  SRAFRA  234
            SR FRA
Sbjct  714  SRPFRA  719


 Score = 18.9 bits (37),  Expect =  9070, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  269   RVEAARR  275
             R EA RR
Sbjct  3102  RAEASRR  3108


 Score = 18.0 bits (35),  Expect = 16940, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  75   SLAVADLLVAT  85
            S AVA  L AT
Sbjct  522  SFAVAAFLLAT  532


 Score = 17.6 bits (34),  Expect = 19804, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 2/15 (13%)

Query  264   PVNRRRVEAARRAQE  278
             PV   R EA RR Q+
Sbjct  3352  PVTSPR-EA-RRGQQ  3364


 Score = 17.2 bits (33),  Expect = 28863, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  51    GNVLVCM  57
             G  +VCM
Sbjct  2072  GSAMVCM  2078


 Score = 17.2 bits (33),  Expect = 31064, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 3/11 (27%)

Query  226  KRSSR---AFR  233
            KRS R    FR
Sbjct  20   KRSPRRRSGFR  30


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  216   LRRR  219
             LRRR
Sbjct  3840  LRRR  3843


 Score = 16.8 bits (32),  Expect = 40922, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  227  RSSRAF  232
            R SR F
Sbjct  718  RASRSF  723


 Score = 16.3 bits (31),  Expect = 51489, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  216  LRRRR  220
            LR RR
Sbjct  185  LRHRR  189


 Score = 15.9 bits (30),  Expect = 66594, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  59    VSREKA  64
             V RE A
Sbjct  2191  VTRERA  2196


>ref|ZP_03539196.1|  conserved hypothetical integral membrane protein [Borrelia garinii 
PBr]
Length=451

 Score = 26.1 bits (54),  Expect =    72, Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 37/124 (29%), Gaps = 19/124 (15%)

Query  169  PLLFGLNNADQNECIIANPAFVV-----------YSSIVSFYVPFIVT---LLVYIKIYI  214
             LL  L  AD N CI                   +  I S ++ FI+    L V I    
Sbjct  314  QLLLALASADKN-CIFSHGGITLSLLLATYMWSGFDKIMSIFIGFIIIKEGLNVIINNAN  372

Query  215  VLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVI---MKSNGSFPVNRRRVE  271
             L      ++ KRS       L    K    H +  KL   I   + S   F       +
Sbjct  373  NLLSKQN-IDLKRSVKDTLKNLNINFKTLNFHNQGNKLVLYIKINLNSENEFQSFINKTQ  431

Query  272  AARR  275
              R 
Sbjct  432  NIRK  435


>ref|XP_002366373.1|  hypothetical protein TGME49_027300 [Toxoplasma gondii ME49]
Length=2457

 GENE ID: 7895129 TGME49_027300 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    72, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  404   PPVLYSAFTW  413
             PPV +SAF W
Sbjct  2006  PPVFFSAFKW  2015


 Score = 23.1 bits (47),  Expect =   484, Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 4/16 (25%)

Query  50    FGNV---LVCMAVSRE  62
             FG V   LVC A+ RE
Sbjct  1482  FGKVPVELVC-AINRE  1496


 Score = 21.8 bits (44),  Expect =  1258, Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 4/25 (16%)

Query  255   VIMKSNGSF-PVNRRRVEAARRAQE  278
             VI   N SF    RR  E  RR +E
Sbjct  2351  VI---NASFCQTGRRSAENERREEE  2372


 Score = 21.4 bits (43),  Expect =  1642, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)

Query  270   VEA-ARRAQELEMEM  283
             VEA A RA E + EM
Sbjct  2094  VEAEAKRATETQREM  2108


 Score = 20.2 bits (40),  Expect =  3859, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 5/15 (33%)

Query  217   RRR-----RKRVNTK  226
             RRR      KR NTK
Sbjct  1276  RRRQIHAEKKRKNTK  1290


 Score = 20.2 bits (40),  Expect =  4004, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  270   VEAARRA  276
             V AARRA
Sbjct  1529  VAAARRA  1535


 Score = 19.3 bits (38),  Expect =  6948, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 8/16 (50%), Gaps = 7/16 (43%)

Query  267   RR--R-----VEAARR  275
             RR  R     VEA RR
Sbjct  1030  RRQGREDGETVEATRR  1045


 Score = 18.9 bits (37),  Expect =  9942, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 0/13 (0%)

Query  272  AARRAQELEMEML  284
            AAR   ELE  +L
Sbjct  431  AARQQRELEVSLL  443


 Score = 18.5 bits (36),  Expect = 13968, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  296  SPIPPS  301
            SP PPS
Sbjct  926  SPLPPS  931


 Score = 18.5 bits (36),  Expect = 14227, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  235   HLRAPL  240
             HLRA L
Sbjct  1058  HLRAAL  1063


 Score = 18.0 bits (35),  Expect = 18570, Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 9/25 (36%), Gaps = 12/25 (48%)

Query  218  RRRKRVNTKRS-------SRAFRAH  235
            RRR      RS       SR F A 
Sbjct  40   RRR-----QRSGIEGSSLSRSFSAN  59


 Score = 18.0 bits (35),  Expect = 18570, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  307   LPDPSH  312
             LP PSH
Sbjct  1134  LPSPSH  1139


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 4/14 (28%)

Query  275   RAQELEMEMLSSTS  288
             RA    +E L STS
Sbjct  2020  RA----LERLTSTS  2029


 Score = 16.8 bits (32),  Expect = 35654, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  42   TLLIAV  47
            TLL AV
Sbjct  506  TLLLAV  511


 Score = 16.3 bits (31),  Expect = 57490, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  377   IVLGVF  382
             IV G+F
Sbjct  2221  IVVGIF  2226


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 13/24 (54%)

Query  267  RRRVE------------AARRAQE  278
            RRR E            A RRA +
Sbjct  196  RRR-ELRSSSPILPGGPAGRRARD  218


 Score = 15.9 bits (30),  Expect = 75042, Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 4/18 (22%)

Query  353   TSLKTMS----RRKLSQQ  366
             T L  +S    RR  S Q
Sbjct  1552  TALSALSRLPFRRRFSPQ  1569


 Score = 15.5 bits (29),  Expect = 91012, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  280  EMEML  284
            EME L
Sbjct  716  EMETL  720


>ref|XP_002366981.1|  P-type ATPase, putative [Toxoplasma gondii ME49]
Length=2301

 GENE ID: 7899532 TGME49_045510 | P-type ATPase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 26.1 bits (54),  Expect =    73, Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 34/112 (30%), Gaps = 21/112 (18%)

Query  34   YNYYATLLTL------LIAVIVFGNVLVCMAVSR---EKALQTTTNYLIVSLAVA----D  80
            YN  A LL        LIA + F      M       E   +        SL VA     
Sbjct  469  YNQHALLLAIAQFLLCLIAAVAFASHNQNMSDHAWYLESSWESGVGNFFASLGVAFGQYV  528

Query  81   LLVATLV-MPWVVYLEVVGEWKFSRIHCDIFVTLDV-MMCTASILNLCAISI  130
            LL    V     V LEV       R     F   D  M C A     CA S+
Sbjct  529  LLLSYFVPITLLVQLEV------CRACQAGFLSVDDRMFCPATEQKACAQSV  574


 Score = 20.2 bits (40),  Expect =  3521, Method: Compositional matrix adjust.
 Identities = 8/11 (72%), Positives = 8/11 (72%), Gaps = 0/11 (0%)

Query  405   PVLYSAFTWLG  415
             PVLY AF  LG
Sbjct  1958  PVLYPAFSKLG  1968


 Score = 17.6 bits (34),  Expect = 19622, Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)

Query  305  LTLPDPSHHGLHSTPDSPAKPEKNGHAKDHPKIAKIFEIQ  344
            L LP  S    H     P   E  G  K         EIQ
Sbjct  843  LSLPLASPLPSHAGSAQPSLRESSGRGKGSHSTS---EIQ  879


 Score = 16.8 bits (32),  Expect = 44450, Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 14/47 (29%), Gaps = 12/47 (25%)

Query  182  CIIANPAFVVY------------SSIVSFYVPFIVTLLVYIKIYIVL  216
            C IA  AF               SS  S    F   L V    Y+ L
Sbjct  484  CLIAAVAFASHNQNMSDHAWYLESSWESGVGNFFASLGVAFGQYVLL  530


>ref|XP_002369662.1|  hypothetical protein TGME49_009020 [Toxoplasma gondii ME49]
Length=720

 GENE ID: 7896589 TGME49_009020 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    74, Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 16/73 (21%)

Query  362  KLSQQKEKKATQMLAIVLGVFIICWLPFFIT-----HILNIHCDCNI----PP----VLY  408
             L QQ +K     L IVL VF+   LP  I        L   C C I    PP    V Y
Sbjct  286  ELKQQRDKTP---LEIVLSVFVGENLPEGIVKQSTEWLLELSCLCTILRHTPPEDREVPY  342

Query  409  SAFTWLGYVNSAV  421
                 L   N   
Sbjct  343  DLLLRLVNANASL  355


 Score = 17.2 bits (33),  Expect = 34368, Method: Compositional matrix adjust.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  366  QKEKKATQ  373
            Q EKK TQ
Sbjct  456  QEEKKGTQ  463


 Score = 15.9 bits (30),  Expect = 69087, Method: Compositional matrix adjust.
 Identities = 6/13 (46%), Positives = 6/13 (46%), Gaps = 0/13 (0%)

Query  309  DPSHHGLHSTPDS  321
            D     LH T DS
Sbjct  41   DAADRVLHPTSDS  53


>ref|XP_002366094.1|  kazal-type serine protease inhibitor domain-containing protein 
[Toxoplasma gondii ME49]
Length=1979

 GENE ID: 7898224 TGME49_024080 | kazal-type serine protease inhibitor
domain-containing protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    76, Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 11/40 (27%)

Query  282  EML-------SSTSPPERTR---YSPIPPSHHQLTLPDPS  311
            EML         TS P+  R    SP P  H+QL L  PS
Sbjct  330  EMLQRNYLQAAETSAPDISRLPASSPLPALHQQL-LRSPS  368


 Score = 21.4 bits (43),  Expect =  1598, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 2/15 (13%)

Query  287  TSPPERT-RYSPIPP  300
            TS P R   YSP PP
Sbjct  154  TSSPSRAPQYSP-PP  167


 Score = 17.6 bits (34),  Expect = 24917, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  369   KKATQML  375
             KK T ML
Sbjct  1775  KKETPML  1781


 Score = 16.8 bits (32),  Expect = 36989, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 1/13 (7%)

Query  327   KNGHAKDHPKIAK  339
             K+G  KD PK AK
Sbjct  1571  KDGWSKDTPK-AK  1582


 Score = 15.9 bits (30),  Expect = 67829, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  296   SPIPPSHH  303
             SP P S H
Sbjct  1363  SPNPASRH  1370


 Score = 15.5 bits (29),  Expect = 91012, Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 13/39 (33%), Gaps = 25/39 (64%)

Query  296  SPI------------PPSHHQLTLPDP-----SHH--GL  315
            SPI            PPS       DP     SH+  GL
Sbjct  272  SPISSPGVYVHPSRPPPS------ADPPMYNHSHQQTGL  304


>ref|YP_073057.1|  hypothetical protein BG0634 [Borrelia garinii PBi]
Length=453

 GENE ID: 2957843 BG0634 | hypothetical protein [Borrelia garinii PBi]
(10 or fewer PubMed links)

 Score = 25.7 bits (53),  Expect =    76, Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 37/124 (29%), Gaps = 19/124 (15%)

Query  169  PLLFGLNNADQNECIIANPAFVV-----------YSSIVSFYVPFIVT---LLVYIKIYI  214
             LL  L  AD N CI                   +  I S ++ FI+    L V I    
Sbjct  316  QLLLALASADKN-CIFSHGGITLSLLLATYMWSGFDKIMSIFIGFIIIKEGLNVIINNAN  374

Query  215  VLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVI---MKSNGSFPVNRRRVE  271
             L      ++ KRS       L    K    H +  KL   I   + S   F       +
Sbjct  375  NLLSKQN-IDLKRSVKDTLKNLNINFKTLNFHNQGNKLVLYIKINLNSENEFQSFINKTQ  433

Query  272  AARR  275
              R 
Sbjct  434  NIRK  437


>ref|NP_044524.1|  envelope glycoprotein K [Human herpesvirus 2]
Length=338

 GENE ID: 1487342 UL53 | type 3 membrane protein; contains a signal peptide; 4
transmembrane domains [Human herpesvirus 2] (10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    78, Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 39/141 (27%), Gaps = 26/141 (18%)

Query  125  LCAISIDRYTAVAM------PMLYNTRYSSKRRVTVMISIVWVLSFTISCPLLFGLNNAD  178
            LC  S+ R T V +        LY         + V +     L F +   L  G     
Sbjct  186  LCELSVQRQTLVQLFEADPVTFLYH-----RPAIGVIVGCELLLRF-VALGLIVGTALIS  239

Query  179  QNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRAHLRA  238
               C I  P F     I       I+ L      Y +LRR     N        R     
Sbjct  240  RGACAITHPLFL---TITTWCFVSIIAL---TELYFILRRGSAPKNAEPAAPRGRSKGWS  293

Query  239  PLKGNCTHPEDMKLCTVIMKS  259
               G C        C +I+  
Sbjct  294  GVCGRC--------CSIILSG  306


 Score = 18.5 bits (36),  Expect = 11307, Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 32/118 (27%), Gaps = 17/118 (14%)

Query  286  STSPPERTRYSPIPPSHH---QLTLPDPSHHGLH-STPDSPAKPEKNGHAKDHPKIAKIF  341
              SP  R  Y   P   H    L      +  L    P  P       HA      A I 
Sbjct  30   GASPLHRCIYAVRPAGAHNDTALVWMKINQTLLFLGPPTAPPGGAWTPHARVC--YANII  87

Query  342  EIQTMPNGKTRTSLKTMSRRKLSQQKEKK------ATQMLAIVLGVFIICWLPFFITH  393
            E               MSRR +  +           TQM  +V G F    L F   H
Sbjct  88   EGRAVSLPAIP---GAMSRRVMNVHEAVNCLEALWDTQMRLVVVGWFL--YLAFVALH  140


>ref|XP_002370093.1|  MORN repeat-containing protein [Toxoplasma gondii ME49]
Length=3227

 GENE ID: 7899946 TGME49_023060 | MORN repeat-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    79, Method: Composition-based stats.
 Identities = 7/8 (87%), Positives = 8/8 (100%), Gaps = 0/8 (0%)

Query  319   PDSPAKPE  326
             P+SPAKPE
Sbjct  2313  PESPAKPE  2320


 Score = 21.8 bits (44),  Expect =  1148, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  97    VGEWKFSRIH  106
             VGEW  SR H
Sbjct  2638  VGEWSMSRYH  2647


 Score = 18.5 bits (36),  Expect = 12395, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  286   STSPP  290
             STSPP
Sbjct  2627  STSPP  2631


 Score = 17.6 bits (34),  Expect = 26088, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  291   ERTRY  295
             ERTR+
Sbjct  1338  ERTRF  1342


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  266   NRRR  269
             NRRR
Sbjct  1493  NRRR  1496


 Score = 16.8 bits (32),  Expect = 42454, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  167  SCPLLFG  173
            SC LL+G
Sbjct  863  SCVLLYG  869


 Score = 15.9 bits (30),  Expect = 81511, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  85    TLVMP  89
             TLV+P
Sbjct  2392  TLVLP  2396


 Score = 15.5 bits (29),  Expect = 85343, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  170   LLFGLNNA  177
             LL  LN A
Sbjct  1254  LLLSLNSA  1261


>ref|XP_002370874.1|  hypothetical protein TGME49_015550 [Toxoplasma gondii ME49]
Length=1540

 GENE ID: 7897053 TGME49_015550 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    80, Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 18/38 (47%)

Query  267  RRRVEAARR---AQELEMEMLS-STSP-------PERT  293
            R RVEA RR   AQ       S   SP       PER 
Sbjct  376  RQRVEAHRRKREAQ-------SGASSPDAEGAEDPERS  406


 Score = 16.3 bits (31),  Expect = 63022, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  325  PEKN  328
            PEKN
Sbjct  84   PEKN  87


 Score = 15.9 bits (30),  Expect = 69725, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  261   GSFP  264
             GSFP
Sbjct  1217  GSFP  1220


 Score = 15.5 bits (29),  Expect = 87728, Method: Composition-based stats.
 Identities = 5/11 (45%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  264  PVNRRRVEAAR  274
            PV   R + AR
Sbjct  434  PVEPQRMQPAR  444


>ref|XP_002370532.1|  hypothetical protein TGME49_078290 [Toxoplasma gondii ME49]
Length=364

 GENE ID: 7900391 TGME49_078290 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    81, Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 8/55 (14%)

Query  274  RRAQELEMEMLSSTSPPERTRYSPIPPSH---HQLTLPDPSHHGLHSTPDSPAKP  325
             R QE        T  P     SP  P H   H     DPS+    S P  PA P
Sbjct  237  KREQEE-----TGTTAPHSSPDSPNGPGHSEAHPVAPLDPSQDQSDSSPTAPAEP  286


 Score = 21.8 bits (44),  Expect =  1354, Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 11/20 (55%), Gaps = 3/20 (15%)

Query  316  HSTPDSPAKPEKNGHAKDHP  335
            HS PDSP  P   GH   HP
Sbjct  249  HSSPDSPNGP---GHSEAHP  265


>ref|XP_002370285.1|  hypothetical protein TGME49_104910 [Toxoplasma gondii ME49]
Length=1840

 GENE ID: 7894107 TGME49_104910 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    83, Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query  217  RRRRK---RVNTKRSSRAFRAH  235
            RRRR     V T    RA RA+
Sbjct  940  RRRRDWLGKVATNQAARALRAQ  961


 Score = 20.6 bits (41),  Expect =  3212, Method: Composition-based stats.
 Identities = 8/12 (66%), Positives = 8/12 (66%), Gaps = 0/12 (0%)

Query  219   RRKRVNTKRSSR  230
             RRKR  T R SR
Sbjct  1355  RRKRERTARDSR  1366


 Score = 18.9 bits (37),  Expect =  9153, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  169  PLLFG  173
            PLLFG
Sbjct  970  PLLFG  974


 Score = 18.9 bits (37),  Expect =  9851, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  289  PPERTR  294
            PPER R
Sbjct  773  PPERPR  778


 Score = 18.5 bits (36),  Expect = 13340, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 3/13 (23%)

Query  261   GSFP---VNRRRV  270
             G FP    NR RV
Sbjct  1032  GDFPRILTNRQRV  1044


 Score = 18.0 bits (35),  Expect = 18914, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  268   RRVEAA  273
             RR EAA
Sbjct  1551  RRLEAA  1556


 Score = 16.8 bits (32),  Expect = 42066, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  216   LRRRRKRV  223
             L RR  RV
Sbjct  1088  LWRRWSRV  1095


>ref|XP_002365428.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=235

 GENE ID: 7894802 TGME49_063280 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 25.7 bits (53),  Expect =    84, Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 22/75 (29%), Gaps = 25/75 (33%)

Query  149  KRRVTVMISIVWV-LSFTISCPLLFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVTLL  207
            KRR T M  +  V L  T   PL                         VS  V F   LL
Sbjct  104  KRRGTAMPAVGAVLLGLTLGYPLG------------------------VSLTVAFNGSLL  139

Query  208  VYIKIYIVLRRRRKR  222
              I   I    RR R
Sbjct  140  RRISGDILEIQRRNR  154


>ref|XP_002369329.1|  PPR repeat-containing protein [Toxoplasma gondii ME49]
Length=1945

 GENE ID: 7899943 TGME49_052210 | PPR repeat-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    85, Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 8/32 (25%)

Query  81   LLVATLVMPWVVYLEVVG---EWKFSRIHCDI  109
            LL AT VMP  V   +VG    WK   I CDI
Sbjct  765  LLGAT-VMPHAV--SIVGYRTIWKI--IKCDI  791


 Score = 17.6 bits (34),  Expect = 23151, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  298   IPPSHHQLT  306
             IPPS   LT
Sbjct  1226  IPPSNFTLT  1234


 Score = 15.9 bits (30),  Expect = 77140, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  125  LCAIS  129
            LC IS
Sbjct  180  LCGIS  184


 Score = 15.5 bits (29),  Expect = 93555, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 2/9 (22%)

Query  271  EAARRAQEL  279
            EA  RA EL
Sbjct  94   EA--RADEL  100


 Score = 15.5 bits (29),  Expect = 99770, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 4/7 (57%), Gaps = 0/7 (0%)

Query  422   NPIIYTT  428
             N I Y T
Sbjct  1089  NTIMYST  1095


>ref|YP_709692.1|  phosphatidyltransferase [Borrelia afzelii PKo]
Length=234

 GENE ID: 4227466 BAPKO_0258 | phosphatidyltransferase [Borrelia afzelii PKo]
(10 or fewer PubMed links)

 Score = 25.7 bits (53),  Expect =    87, Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query  108  DIFVTLDVMMCTASILNLCAISIDRYTA-VAMPMLYNTRYSSKRRVTVMISIVWVLSFTI  166
            +IFV L++        NL   SI   T  +     Y       R +T+   I+  L F I
Sbjct  136  NIFVILNIIFKIEQTTNLIMMSICIITSFIPIKFIYPSKTKELRKITIPLTIISCLIFVI  195

Query  167  SC  168
            S 
Sbjct  196  SI  197


>ref|XP_002368724.1|  hypothetical protein TGME49_066350 [Toxoplasma gondii ME49]
Length=344

 GENE ID: 7900711 TGME49_066350 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 25.7 bits (53),  Expect =    89, Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 39/165 (23%), Gaps = 35/165 (21%)

Query  251  KLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDP  310
            K       S+G      R         E E      TSP E T      PS      P  
Sbjct  161  KTVGATEESDGTSVTTQRPTSGSS---ESEAGK-PGTSPGESTDQGGETPSPTPESGPSG  216

Query  311  SHH------GLHSTPDSPAKPEKNGHAKD--------------HPKIAKIFEIQ------  344
             +       G     D     E  G+  D              H     I E Q      
Sbjct  217  GQDNASGNTGNSEHNDGGTQDEEGGQSEDDAGKTDSSEAGTSTHHAASEISEAQIKSTAL  276

Query  345  ---TMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFIICW  386
                 P             R LS+Q E K    L IV  V    W
Sbjct  277  SSGATPGDDAVPGQEGVQTRRLSEQSETKDPFYLTIV--VHSAAW  319


>ref|XP_002371582.1|  hypothetical protein TGME49_020590 [Toxoplasma gondii ME49]
Length=1541

 GENE ID: 7893699 TGME49_020590 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    91, Method: Composition-based stats.
 Identities = 7/7 (100%), Positives = 7/7 (100%), Gaps = 0/7 (0%)

Query  286   STSPPER  292
             STSPPER
Sbjct  1244  STSPPER  1250


 Score = 18.9 bits (37),  Expect =  8583, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  234  AHLRAP  239
            AHLR P
Sbjct  195  AHLRPP  200


 Score = 18.5 bits (36),  Expect = 13840, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  321  SPAKPE  326
            SP KPE
Sbjct  937  SPPKPE  942


 Score = 18.0 bits (35),  Expect = 16179, Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 12/35 (34%), Gaps = 18/35 (51%)

Query  223  VNTK-------RSSRA----------FRAHLRAPL  240
            V TK       RSS A          F   LR PL
Sbjct  155  VSTKTKEASCLRSS-ASCPVLPFPFLFSSPLRSPL  188


 Score = 18.0 bits (35),  Expect = 17254, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  57    MAVSREK  63
             M V REK
Sbjct  1184  MLVAREK  1190


 Score = 17.6 bits (34),  Expect = 21119, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  265   VNRRRVEAARR  275
             V   R E ARR
Sbjct  1102  VAQQRAENARR  1112


 Score = 16.8 bits (32),  Expect = 41681, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  267  RRRVEAARR  275
            R R EA  R
Sbjct  478  RQRTEASSR  486


>ref|XP_002371626.1|  hypothetical protein TGME49_076200 [Toxoplasma gondii ME49]
Length=4038

 GENE ID: 7893746 TGME49_076200 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    93, Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 18/40 (45%)

Query  264   PVNRRRVE-----AARR---AQELEMEMLSSTSPPERTRY  295
             PV R   E     AARR    Q LE E        ER RY
Sbjct  3368  PVKRQ--ELVASVAARRIALGQPLERE--------ERERY  3397


 Score = 20.6 bits (41),  Expect =  2876, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  218  RRRKRVNTKR  227
            RRRK   T R
Sbjct  584  RRRKHSSTRR  593


 Score = 20.6 bits (41),  Expect =  3096, Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 14/36 (38%)

Query  268   RRVEAARRA-------------QELEMEMLSSTSPP  290
             R  EA RR              +ELE  M  S SPP
Sbjct  1154  RKAEAFRRSSKSPTTGITCRDKHELE-SMPPSLSPP  1188


 Score = 19.3 bits (38),  Expect =  8049, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  283   MLSSTSPPERT  293
             ML   SPP R 
Sbjct  3154  MLREASPPSRS  3164


 Score = 18.5 bits (36),  Expect = 13340, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  284   LSSTSPPERTR  294
             LS   P ER R
Sbjct  2563  LSRLTPSERSR  2573


 Score = 18.5 bits (36),  Expect = 14096, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  272   AARRAQ  277
             AA RAQ
Sbjct  1437  AAKRAQ  1442


 Score = 18.0 bits (35),  Expect = 17574, Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)

Query  306   TL-PDPSHH-GLHSTPDSPA  323
             TL P+ S H  L  TP  PA
Sbjct  1517  TLSPNSSEHCPLDATPSNPA  1536


 Score = 18.0 bits (35),  Expect = 18232, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 2/15 (13%)

Query  313   HGLHSTPDSPAK-PE  326
             HGL    D P K PE
Sbjct  3991  HGLRAA-DTPQKGPE  4004


 Score = 17.6 bits (34),  Expect = 21709, Method: Composition-based stats.
 Identities = 5/10 (50%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  318   TPDSPAKPEK  327
              PD PA  +K
Sbjct  2965  SPDRPANADK  2974


 Score = 17.2 bits (33),  Expect = 29943, Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 3/17 (17%)

Query  218   RR---RKRVNTKRSSRA  231
             RR   RK + T   S A
Sbjct  1251  RRIALRKHISTRTGSKA  1267


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  218  RRRK  221
            RRRK
Sbjct  604  RRRK  607


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 5/11 (45%), Positives = 5/11 (45%), Gaps = 4/11 (36%)

Query  14    ERQ----NWSR  20
             ERQ     W R
Sbjct  2217  ERQGVSEEWAR  2227


 Score = 16.3 bits (31),  Expect = 60193, Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 12/28 (42%)

Query  285   SST-SPPERTRYSPI----------PPS  301
             SST   PE T  SP           PPS
Sbjct  3463  SSTCAAPEWTQ-SPRSACRPHKSSSPPS  3489


 Score = 16.3 bits (31),  Expect = 62446, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  308   PDPS  311
             PDPS
Sbjct  3627  PDPS  3630


>ref|XP_002368396.1|  hypothetical protein TGME49_089710 [Toxoplasma gondii ME49]
Length=2282

 GENE ID: 7897774 TGME49_089710 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    94, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  313  HGLHSTPDSP  322
            H L STPDSP
Sbjct  100  HALSSTPDSP  109


 Score = 19.3 bits (38),  Expect =  7478, Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 29/50 (58%)

Query  284  LSSTSPPERTRYSPI-----P---------------PSHH-------QLT  306
            LSST  P+  R+SP+     P               PS H       QLT
Sbjct  102  LSST--PDSPRFSPVRRTASPSAALLSKVLVGGAGSPSGHVTPSSSLQLT  149


 Score = 17.6 bits (34),  Expect = 20735, Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 8/19 (42%)

Query  224  NTKRS----SRAF----RA  234
            NT RS    SR F    RA
Sbjct  267  NTPRSGHLFSRVFSPTGRA  285


 Score = 17.2 bits (33),  Expect = 31640, Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 10/20 (50%), Gaps = 9/20 (45%)

Query  292  RTRYSPIPPSHHQLTLPDPS  311
            RT   P PPS     L DPS
Sbjct  402  RT---P-PPS-----LLDPS  412


 Score = 16.3 bits (31),  Expect = 54909, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 9/13 (69%), Gaps = 2/13 (15%)

Query  185  ANPAFVVYSSIVS  197
            A+P F V+S  VS
Sbjct  586  ADPLFGVFS--VS  596


 Score = 15.9 bits (30),  Expect = 65985, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  348  NGKTRT  353
            NG TRT
Sbjct  674  NGGTRT  679


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 3/5 (60%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  17   NWSRP  21
            +WS P
Sbjct  809  DWSKP  813


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  60    SREK  63
             SREK
Sbjct  1691  SREK  1694


 Score = 15.5 bits (29),  Expect = 99770, Method: Composition-based stats.
 Identities = 3/6 (50%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  342   EIQTMP  347
             ++QT+P
Sbjct  2270  DVQTLP  2275


>ref|ZP_03675643.1|  conserved hypothetical protein [Borrelia spielmanii A14S]
Length=336

 Score = 25.7 bits (53),  Expect =    98, Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 6/27 (22%)

Query  15   RQNWSRPFN------GSDGKADRPHYN  35
             +   R FN      G DGK DR  Y+
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRSNYD  330


>ref|XP_002364499.1|  hypothetical protein TGME49_112870 [Toxoplasma gondii ME49]
Length=1420

 GENE ID: 7900557 TGME49_112870 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.7 bits (53),  Expect =    98, Method: Composition-based stats.
 Identities = 8/11 (72%), Positives = 8/11 (72%), Gaps = 1/11 (9%)

Query  379  LGVFIICWLPF  389
            LGVF   WLPF
Sbjct  926  LGVFL-SWLPF  935


 Score = 18.5 bits (36),  Expect = 13588, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  61    REKALQTT  68
             REKA Q T
Sbjct  1112  REKARQAT  1119


 Score = 17.6 bits (34),  Expect = 24463, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 1/10 (10%)

Query  271  EAARRAQELE  280
            E ARR +E E
Sbjct  378  EGARR-EEVE  386


 Score = 17.2 bits (33),  Expect = 27065, Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 7/17 (41%), Gaps = 5/17 (29%)

Query  344  QTMPNGKTRTSLKTMSR  360
            QT      R SLK   R
Sbjct  130  QT-----SRSSLKSKQR  141


 Score = 15.9 bits (30),  Expect = 65985, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  313  HGLHST  318
            H LHS 
Sbjct  660  HSLHSS  665


 Score = 15.9 bits (30),  Expect = 73676, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  219  RRKRV  223
            RR RV
Sbjct  334  RRTRV  338


 Score = 15.5 bits (29),  Expect = 95290, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  321  SPAKP  325
            SP KP
Sbjct  259  SPSKP  263


>ref|XP_002366586.1|  hypothetical protein TGME49_039470 [Toxoplasma gondii ME49]
Length=1984

 GENE ID: 7894710 TGME49_039470 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   100, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  269  RVEAARRAQE  278
            R  AARRAQE
Sbjct  376  RLHAARRAQE  385


 Score = 19.7 bits (39),  Expect =  4638, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  74    VSLAVA  79
             VSLAVA
Sbjct  1412  VSLAVA  1417


 Score = 17.6 bits (34),  Expect = 23581, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  72   LIVSLAVA  79
            L V LAVA
Sbjct  519  LFVDLAVA  526


 Score = 17.2 bits (33),  Expect = 33742, Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 9/27 (33%), Gaps = 16/27 (59%)

Query  271   EAARR--AQELEMEMLSSTSPPERTRY  295
             E ARR  A E              TRY
Sbjct  1972  EGARRTVARE--------------TRY  1984


 Score = 16.3 bits (31),  Expect = 51489, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  23    NGSDGKADR  31
              G DG A+R
Sbjct  1889  HGGDGEANR  1897


 Score = 15.9 bits (30),  Expect = 67209, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 4/11 (36%)

Query  160  WVLSFTISCPL  170
            WV SF    PL
Sbjct  8    WVNSF----PL  14


>ref|YP_002364662.1|  hypothetical protein BbuZS7_AC29 [Borrelia burgdorferi ZS7]
 ref|YP_002640462.1|  hypothetical protein BVAVS116_Q0001 [Borrelia valaisiana VS116]
 ref|ZP_03797653.1|  conserved hypothetical protein [Borrelia burgdorferi Bol26]
Length=408

 GENE ID: 7095732 BbuZS7_AC29 | hypothetical protein [Borrelia burgdorferi ZS7]

 Score = 25.2 bits (52),  Expect =   101, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|XP_002370317.1|  XPA-binding protein, putative [Toxoplasma gondii ME49]
Length=966

 GENE ID: 7894138 TGME49_105240 | XPA-binding protein, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   102, Method: Compositional matrix adjust.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 0/40 (0%)

Query  390  FITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTF  429
            F+T   +I  +       +    W GY NS  +   YT F
Sbjct  38   FVTKETDIVYEQELQRDPFQVKVWVGYLNSKKDAPPYTRF  77


 Score = 15.5 bits (29),  Expect = 90180, Method: Compositional matrix adjust.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  87  VMPWVVYL  94
           V  WV YL
Sbjct  58  VKVWVGYL  65


>ref|XP_002365768.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=1739

 GENE ID: 7893433 TGME49_071020 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   103, Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 5/29 (17%)

Query  215  VLRRRRKR-----VNTKRSSRAFRAHLRA  238
            VLRR R R     V    S R  R H RA
Sbjct  796  VLRRKRDRSAESAVADPQSRRKLRGHVRA  824


 Score = 24.4 bits (50),  Expect =   191, Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 27/52 (51%)

Query  275  RAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHGL-HSTPDSPAKP  325
             AQE          P E    SP PP            HGL   TPDS A P
Sbjct  92   KAQE----------PTE----SPPPP------------HGLENPTPDSRAEP  117


 Score = 20.2 bits (40),  Expect =  4078, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  7     SWYDD  11
             SWYD+
Sbjct  1566  SWYDE  1570


 Score = 19.7 bits (39),  Expect =  4901, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query  267  RRR-VEAARRAQE  278
            R R V+  RR +E
Sbjct  272  RKRQVDSERRGEE  284


 Score = 19.7 bits (39),  Expect =  5084, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  288  SPPER  292
            SPPER
Sbjct  216  SPPER  220


 Score = 18.9 bits (37),  Expect =  8427, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  359  SRRKL  363
            SRRKL
Sbjct  814  SRRKL  818


 Score = 18.5 bits (36),  Expect = 11411, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  140   MLYNTRY  146
             ML  TRY
Sbjct  1243  MLVSTRY  1249


 Score = 18.5 bits (36),  Expect = 11517, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  226  KRSSRAF  232
             RS RAF
Sbjct  605  RRSCRAF  611


 Score = 17.6 bits (34),  Expect = 26088, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  219   RRKRV  223
             RR RV
Sbjct  1611  RRRRV  1615


 Score = 17.2 bits (33),  Expect = 29669, Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 11/22 (50%)

Query  268  RR--VEAA--------RRAQEL  279
            RR  V+AA         R QEL
Sbjct  556  RRAGVDAAISLEESKLKR-QEL  576


 Score = 16.3 bits (31),  Expect = 53909, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  317  STPDSPA  323
            STP  PA
Sbjct  420  STPGPPA  426


 Score = 16.3 bits (31),  Expect = 61309, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  273   ARRAQ  277
             ARRA+
Sbjct  1505  ARRAE  1509


>ref|ZP_03540338.1|  ribose/galactose ABC transporter, permease protein [Borrelia 
garinii Far04]
Length=383


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   105, Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 0/30 (0%)

Query  403  IPPVLYSAFTWLGYVNSAVNPIIYTTFNIE  432
            I  +L+S    LGYV S   P I+T   I 
Sbjct  52   ILEILFSSPKHLGYVLSYASPLIFTGLSIG  81


 Score = 16.3 bits (31),  Expect = 53909, Method: Compositional matrix adjust.
 Identities = 6/12 (50%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  70  NYLIVSLAVADL  81
            +LIV L V  L
Sbjct  30  GFLIVGLVVMGL  41


>ref|XP_002367320.1|  hypothetical protein TGME49_049880 [Toxoplasma gondii ME49]
Length=1500

 GENE ID: 7898032 TGME49_049880 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   107, Method: Composition-based stats.
 Identities = 10/12 (83%), Positives = 10/12 (83%), Gaps = 1/12 (8%)

Query  74   VSL-AVADLLVA  84
            VSL AVA LLVA
Sbjct  870  VSLVAVASLLVA  881


 Score = 21.4 bits (43),  Expect =  1657, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  266  NRRRVEAAR  274
            NRRRV   R
Sbjct  636  NRRRVSSGR  644


 Score = 20.6 bits (41),  Expect =  2576, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 7/8 (87%), Gaps = 0/8 (0%)

Query  39   TLLTLLIA  46
            TLL LL+A
Sbjct  566  TLLALLVA  573


 Score = 19.7 bits (39),  Expect =  4767, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 5/15 (33%)

Query  286  STSPPERTRYSPIPP  300
            ST PP     S IPP
Sbjct  250  STPPP-----SNIPP  259


 Score = 18.5 bits (36),  Expect = 13098, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 3/9 (33%)

Query  232  FR---AHLR  237
            FR   AHLR
Sbjct  938  FRLFLAHLR  946


 Score = 17.6 bits (34),  Expect = 25613, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  402  NIPPVL  407
            NIPP L
Sbjct  256  NIPPGL  261


 Score = 16.3 bits (31),  Expect = 51964, Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 32/67 (47%)

Query  265  VNRRRVEAARR-AQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPS-----HHGLHST  318
            V  R V  ARR  QE          P  RT           L L D       H GL+ST
Sbjct  732  VSARHVPVARRLLQE---------GP--RT-----------L-LADTTGDSTDHTGLQST  768

Query  319  PDS--PA  323
             DS  PA
Sbjct  769  -DSRHPA  774


 Score = 15.9 bits (30),  Expect = 74356, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  177   ADQN  180
             ADQN
Sbjct  1258  ADQN  1261


 Score = 15.9 bits (30),  Expect = 80766, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 4/13 (30%)

Query  261   GSFPVNRR-RVEA  272
             GS   +RR R EA
Sbjct  1406  GS---DRRQRAEA  1415


 Score = 15.9 bits (30),  Expect = 83023, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  350  KTRTSL  355
             TR SL
Sbjct  436  RTRSSL  441


>ref|XP_002366783.1|  hypothetical protein TGME49_042630 [Toxoplasma gondii ME49]
Length=2886

 GENE ID: 7894909 TGME49_042630 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   107, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 3/15 (20%)

Query  216   LRRRRKRVNTKRSSR  230
             LRRR K   TKR  R
Sbjct  2639  LRRRKK---TKRNYR  2650


 Score = 18.9 bits (37),  Expect =  9761, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)

Query  267   RR-RVEAARRAQEL  279
             RR R E  RR +EL
Sbjct  1047  RRARKEMDRRVHEL  1060


 Score = 18.5 bits (36),  Expect = 12978, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  183   IIANPA  188
             II NPA
Sbjct  2793  IIDNPA  2798


 Score = 18.5 bits (36),  Expect = 13713, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 4/13 (30%)

Query  216   LRRRRK----RVN  224
             LRR RK    RV 
Sbjct  1046  LRRARKEMDRRVH  1058


 Score = 17.6 bits (34),  Expect = 20171, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  135  AVAMPML  141
            AVA  ML
Sbjct  738  AVAVSML  744


 Score = 17.2 bits (33),  Expect = 27821, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  214  IVLRRRR  220
            +VL RRR
Sbjct  848  VVLLRRR  854


 Score = 16.8 bits (32),  Expect = 37675, Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 11/35 (31%), Gaps = 15/35 (42%)

Query  153  TVMISIVWVLSFTI------SC------PLLFGLN  175
            T MI     L F         C      P LF LN
Sbjct  493  TAMIG---ALCFSMLSQRPTTCAPNTPSPVLFTLN  524


 Score = 15.9 bits (30),  Expect = 70368, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  202   FIVTLL  207
             F VTLL
Sbjct  1356  FSVTLL  1361


 Score = 15.9 bits (30),  Expect = 76434, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  176   NADQNE  181
             +ADQ E
Sbjct  2148  DADQTE  2153


>ref|ZP_03539343.1|  ribose/galactose ABC transporter, permease protein [Borrelia 
garinii PBr]
Length=383


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   107, Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 0/30 (0%)

Query  403  IPPVLYSAFTWLGYVNSAVNPIIYTTFNIE  432
            I  +L+S    LGYV S   P I+T   I 
Sbjct  52   ILEILFSSPKHLGYVLSYASPLIFTGLSIG  81


 Score = 16.3 bits (31),  Expect = 55416, Method: Compositional matrix adjust.
 Identities = 6/12 (50%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  70  NYLIVSLAVADL  81
            +LIV L V  L
Sbjct  30  GFLIVGLVVMGL  41


>ref|ZP_03675499.1|  DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia 
spielmanii A14S]
Length=626


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   111, Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query  42   TLLIAVIVFGNVLVCMAVSREKALQTTTNYLIVSLA---VADLLVATLVMPWVVYLEVVG  98
            T  I    FG     +  S EKA     NY  VS      A+     L +P  VY   V 
Sbjct  221  TIVIRELPFGETTESLISSIEKAIR--KNYIKVSSINDFTAENVAIELSLPRGVYASEVI  278

Query  99   EWKFSRIHCDIFVTLDVMM  117
            E  +    C + +  + ++
Sbjct  279  EKLYHYTNCQVSISVNLLL  297


 Score = 15.9 bits (30),  Expect = 72335, Method: Compositional matrix adjust.
 Identities = 4/12 (33%), Positives = 6/12 (50%), Gaps = 0/12 (0%)

Query  168  CPLLFGLNNADQ  179
            C L +  NN  +
Sbjct  525  CALVYDINNSKE  536


>ref|YP_002724126.1|  hypothetical protein BSV1_A103 [Borrelia sp. SV1]
Length=408

 GENE ID: 7667957 BSV1_A103 | hypothetical protein [Borrelia sp. SV1]

 Score = 25.2 bits (52),  Expect =   111, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|XP_002371883.1|  3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2, putative 
[Toxoplasma gondii ME49]
Length=324

 GENE ID: 7893848 TGME49_104480 | 3-oxo-5 alpha-steroid delta 4-dehydrogenase
alpha 2, putative [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   112, Method: Compositional matrix adjust.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query  93   YLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRV  152
            Y   + EW    I C+ +V L     T   L    + + R         +  RY S R  
Sbjct  263  YFGEICEWAGYAIACNTYVALSFAVFTLCFLTGRGVQVHRWY----LQHFEERYPSGRKA  318

Query  153  TV  154
             +
Sbjct  319  VI  320


 Score = 16.8 bits (32),  Expect = 36989, Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 3/32 (9%)

Query  112  TLDVMMCT--ASILNLCAISIDRYTAVAMPML  141
             + V+ CT    I    AIS D Y     P L
Sbjct  160  AMAVLFCTYNGMIQSWSAISFD-YSSELDPFL  190


>ref|NP_212900.1|  colicin V production protein, putative [Borrelia burgdorferi 
B31]
 ref|ZP_03086968.1|  colicin V production protein, putative [Borrelia burgdorferi 
80a]
 ref|ZP_03436231.1|  CvpA family protein [Borrelia burgdorferi 156a]
 8 more sequence titles
 ref|YP_002375264.1|  CvpA family protein [Borrelia burgdorferi ZS7]
 ref|ZP_03589362.1|  colicin V production protein A (CvpA) [Borrelia burgdorferi 72a]
 ref|ZP_03624067.1|  colicin V production protein A (CvpA) [Borrelia burgdorferi 64b]
 ref|ZP_03673235.1|  colicin V production protein A [Borrelia burgdorferi WI91-23]
 ref|ZP_03673896.1|  colicin V production protein A [Borrelia burgdorferi CA-11.2a]
 ref|ZP_03770914.1|  colicin V production protein A [Borrelia burgdorferi 118a]
 ref|ZP_03796204.1|  colicin V production protein A [Borrelia burgdorferi 29805]
 ref|ZP_03796992.1|  colicin V production protein A [Borrelia burgdorferi Bol26]
Length=162

 GENE ID: 1195623 BB0766 | colicin V production protein, putative
[Borrelia burgdorferi B31] (10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   112, Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query  228  SSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEA  272
             S  FR  LR   K      E   L     K    F   RR VE 
Sbjct  22   TSLGFRGFLRGFIKEISGFAEVFVLILLLYKKTEEF---RRFVEP  63


>ref|YP_161528.1|  hypothetical protein BGP242 [Borrelia garinii PBi]
Length=407

 GENE ID: 3189718 BGP242 | hypothetical protein [Borrelia garinii PBi]
(10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   113, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002776001.1|  hypothetical protein BBU29805_N01 [Borrelia burgdorferi 29805]
Length=407

 GENE ID: 7721679 BBU29805_N01 | hypothetical protein
[Borrelia burgdorferi 29805]

 Score = 25.2 bits (52),  Expect =   114, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002640677.1|  hypothetical protein BBUCA112A_V0001 [Borrelia burgdorferi CA-11.2a]
Length=408

 GENE ID: 7557814 BBUCA112A_V0001 | hypothetical protein
[Borrelia burgdorferi CA-11.2a]

 Score = 25.2 bits (52),  Expect =   114, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002533024.1|  hypothetical protein BBU72A_O0001 [Borrelia burgdorferi 72a]
Length=407

 GENE ID: 7333829 BBU72A_O0001 | hypothetical protein [Borrelia burgdorferi 72a]

 Score = 25.2 bits (52),  Expect =   116, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002533136.1|  hypothetical protein BBU72A_P0001 [Borrelia burgdorferi 72a]
 ref|YP_002527740.1|  hypothetical protein BBU72A_Q0001 [Borrelia burgdorferi 72a]
Length=407

 GENE ID: 7333926 BBU72A_P0001 | hypothetical protein [Borrelia burgdorferi 72a]

 Score = 25.2 bits (52),  Expect =   116, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|XP_002371037.1|  hypothetical protein TGME49_012880 [Toxoplasma gondii ME49]
Length=4817

 GENE ID: 7893618 TGME49_012880 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   116, Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 4/22 (18%)

Query  267   RRRVEA---ARRA-QELEMEML  284
              RRVE    AR A QE E E L
Sbjct  1947  KRRVEDELQARKAEQEAERERL  1968


 Score = 22.7 bits (46),  Expect =   718, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 8/9 (88%), Gaps = 0/9 (0%)

Query  272   AARRAQELE  280
             A RRA+EL+
Sbjct  4759  ATRRAEELQ  4767


 Score = 20.6 bits (41),  Expect =  2552, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)

Query  269   RVEAARRAQELEME  282
             RV+  R AQ LE E
Sbjct  2271  RVQETR-AQGLEQE  2283


 Score = 19.7 bits (39),  Expect =  4724, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 2/14 (14%)

Query  267   RR--RVEAARRAQE  278
             RR   VEA R  QE
Sbjct  2761  RRLSKVEAERDSQE  2774


 Score = 19.7 bits (39),  Expect =  4811, Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 10/23 (43%)

Query  267   RRRVE---AARRAQELEMEMLSS  286
             RR VE   AA        E LSS
Sbjct  3431  RRSVEDADAAK-------EKLSS  3446


 Score = 19.3 bits (38),  Expect =  6759, Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 9/25 (36%), Gaps = 13/25 (52%)

Query  360  RRKL-------------SQQKEKKA  371
            RR L             SQQ EK A
Sbjct  631  RRRLRALQEKKRGAGGASQQEEKSA  655


 Score = 18.9 bits (37),  Expect =  8350, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  268   RRVEAARRA  276
             RRVE   RA
Sbjct  1315  RRVEGLQRA  1323


 Score = 18.9 bits (37),  Expect = 10127, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 7/8 (87%), Gaps = 1/8 (12%)

Query  274   RRA-QELE  280
             RRA +ELE
Sbjct  4563  RRAREELE  4570


 Score = 18.9 bits (37),  Expect = 10506, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 2/10 (20%)

Query  362  KLS--QQKEK  369
            KLS  QQ EK
Sbjct  505  KLSLQQQSEK  514


 Score = 18.5 bits (36),  Expect = 11623, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  268   RRVEAAR  274
             R V+AAR
Sbjct  1444  RQVQAAR  1450


 Score = 18.5 bits (36),  Expect = 14096, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  273  ARRAQELEME  282
            ARRA  LE E
Sbjct  412  ARRALLLEKE  421


 Score = 18.0 bits (35),  Expect = 18570, Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)

Query  267   RRRVEAARRAQELEMEML  284
             RRR  A   A+EL +E L
Sbjct  1244  RRRQAAEAHAEEL-LERL  1260


 Score = 17.6 bits (34),  Expect = 20357, Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 1/15 (6%)

Query  270   VEAARRAQELEMEML  284
             V+ AR  + LE E L
Sbjct  3990  VDSARK-EALEQETL  4003


 Score = 17.6 bits (34),  Expect = 22316, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 8/11 (72%), Gaps = 1/11 (9%)

Query  274   RRAQELEMEML  284
              R QEL+ E+L
Sbjct  2097  KRQQELQ-ELL  2106


 Score = 17.2 bits (33),  Expect = 28337, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 3/14 (21%)

Query  268   RRV---EAARRAQE  278
             R V   E A RA+E
Sbjct  1037  RSVGEAEPASRAHE  1050


 Score = 16.8 bits (32),  Expect = 38728, Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 3/15 (20%)

Query  269   RVE---AARRAQELE  280
             R E   A  R QEL+
Sbjct  2338  RLELRMAEQRMQELQ  2352


 Score = 16.8 bits (32),  Expect = 43641, Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 8/20 (40%)

Query  267   RRRVEA--------ARRAQE  278
             R R E         A RA+E
Sbjct  4211  RQRLEETVAETVGRAKRAEE  4230


 Score = 16.8 bits (32),  Expect = 46540, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  92    VYLE  95
             VYLE
Sbjct  3314  VYLE  3317


 Score = 16.3 bits (31),  Expect = 48282, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  57    MAVSRE  62
             MA  RE
Sbjct  1997  MAANRE  2002


 Score = 16.3 bits (31),  Expect = 50551, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  275   RAQELE  280
             R QEL+
Sbjct  1179  RGQELQ  1184


 Score = 16.3 bits (31),  Expect = 51018, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  270   VEAARR  275
             V+A RR
Sbjct  3627  VQATRR  3632


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 4/21 (19%)

Query  360  RRKLSQQKEKKATQM---LAI  377
            RR L  +KE KA Q+   LA+
Sbjct  413  RRALLLEKETKA-QLEEQLAV  432


 Score = 16.3 bits (31),  Expect = 55927, Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 6/18 (33%)

Query  267   RRRVEAAR----RAQELE  280
              R V+  R    R +ELE
Sbjct  2039  KRHVQ--RELESRGEELE  2054


 Score = 16.3 bits (31),  Expect = 59097, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 2/13 (15%)

Query  268   RRVEAARRAQELE  280
             RR E   RA  LE
Sbjct  4761  RRAEELQRA--LE  4771


 Score = 15.9 bits (30),  Expect = 64784, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  11    DDLER  15
             DDLE 
Sbjct  2894  DDLEK  2898


 Score = 15.9 bits (30),  Expect = 67209, Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 6/15 (40%)

Query  363  LSQQK---EKKATQM  374
            L QQK   E   TQ+
Sbjct  197  LAQQKAELE---TQL  208


 Score = 15.9 bits (30),  Expect = 69087, Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 7/18 (38%)

Query  267   RRRVEAARRAQELEMEML  284
             RR  E    A+E   +ML
Sbjct  2203  RRQAE----AHE---QML  2213


 Score = 15.9 bits (30),  Expect = 69087, Method: Composition-based stats.
 Identities = 3/6 (50%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  11    DDLERQ  16
             ++L+RQ
Sbjct  4048  EELQRQ  4053


 Score = 15.9 bits (30),  Expect = 69725, Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 4/15 (26%)

Query  360   RRKLSQQKEKKATQM  374
             RR   +QK    TQ+
Sbjct  1356  RREVAEQK----TQL  1366


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 6/14 (42%)

Query  269   RV------EAARRA  276
             RV      EAA RA
Sbjct  4400  RVDLRKELEAANRA  4413


 Score = 15.5 bits (29),  Expect = 88538, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  216   LRRRRKR  222
             LRR R R
Sbjct  4242  LRRERQR  4248


 Score = 15.5 bits (29),  Expect = 91012, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  274   RRAQELEMEML  284
             RR QE E E L
Sbjct  1668  RRIQE-E-EKL  1676


>ref|YP_002724688.1|  hypothetical protein BBU94A_V01 [Borrelia burgdorferi 94a]
Length=407

 GENE ID: 7637049 BBU94A_V01 | hypothetical protein [Borrelia burgdorferi 94a]

 Score = 25.2 bits (52),  Expect =   116, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002776268.1|  hypothetical protein BBU29805_V01 [Borrelia burgdorferi 29805]
Length=407

 GENE ID: 7721718 BBU29805_V01 | hypothetical protein
[Borrelia burgdorferi 29805]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002640635.1|  hypothetical protein BBUWI9123_P0001 [Borrelia burgdorferi WI91-23]
Length=407

 GENE ID: 7557771 BBUWI9123_P0001 | hypothetical protein
[Borrelia burgdorferi WI91-23]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002640789.1|  hypothetical protein BBUCA112A_Q0001 [Borrelia burgdorferi CA-11.2a]
Length=407

 GENE ID: 7557937 BBUCA112A_Q0001 | hypothetical protein
[Borrelia burgdorferi CA-11.2a]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002640719.1|  hypothetical protein BBUWI9123_W0001 [Borrelia burgdorferi WI91-23]
Length=407

 GENE ID: 7557834 BBUWI9123_W0001 | hypothetical protein
[Borrelia burgdorferi WI91-23]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002776144.1|  hypothetical protein BBU29805_O01 [Borrelia burgdorferi 29805]
Length=407

 GENE ID: 7709115 BBU29805_O01 | hypothetical protein
[Borrelia burgdorferi 29805]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002724942.1|  hypothetical protein BBU94A_Q01 [Borrelia burgdorferi 94a]
Length=407

 GENE ID: 7668227 BBU94A_Q01 | hypothetical protein [Borrelia burgdorferi 94a]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002725340.1|  hypothetical protein BBU118A_M01 [Borrelia burgdorferi 118a]
Length=407

 GENE ID: 7637532 BBU118A_M01 | hypothetical protein [Borrelia burgdorferi 118a]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002724856.1|  hypothetical protein BBU118A_ON43 [Borrelia burgdorferi 118a]
Length=407

 GENE ID: 7637184 BBU118A_ON43 | hypothetical protein
[Borrelia burgdorferi 118a]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002724996.1|  hypothetical protein BBU118A_Q01 [Borrelia burgdorferi 118a]
Length=407

 GENE ID: 7668285 BBU118A_Q01 | hypothetical protein [Borrelia burgdorferi 118a]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002775960.1|  hypothetical protein BBUBOL26_V01 [Borrelia burgdorferi Bol26]
Length=407

 GENE ID: 7708961 BBUBOL26_V01 | hypothetical protein
[Borrelia burgdorferi Bol26]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|ZP_03797749.1|  conserved hypothetical protein [Borrelia burgdorferi Bol26]
Length=407

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002474443.1|  hypothetical protein Bbu156a_L01 [Borrelia burgdorferi 156a]
 ref|YP_002601212.1|  hypothetical protein BBU64B_SL0044 [Borrelia burgdorferi 64b]
 ref|YP_002606235.1|  hypothetical protein BBU64B_P0001 [Borrelia burgdorferi 64b]
 ref|YP_002640859.1|  hypothetical protein BBUCA112A_S0001 [Borrelia burgdorferi CA-11.2a]
 ref|YP_002640910.1|  hypothetical protein BBUCA112A_N0001 [Borrelia burgdorferi CA-11.2a]
 ref|YP_002641022.1|  hypothetical protein BBUWI9123_Q0001 [Borrelia burgdorferi WI91-23]
 ref|YP_002776048.1|  hypothetical protein BBU29805_R01 [Borrelia burgdorferi 29805]
Length=407

 GENE ID: 7265341 Bbu156a_L01 | hypothetical protein [Borrelia burgdorferi 156a]

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|NP_051249.1|  hypothetical protein BB_R01 [Borrelia burgdorferi B31]
Length=407

 GENE ID: 1194556 BB_R01 | hypothetical protein [Borrelia burgdorferi B31]
(10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|NP_051162.1|  hypothetical protein BB_P01 [Borrelia burgdorferi B31]
 ref|NP_051204.1|  hypothetical protein BB_S01 [Borrelia burgdorferi B31]
 ref|NP_051292.1|  hypothetical protein BB_M01 [Borrelia burgdorferi B31]
 ref|NP_051378.1|  hypothetical protein BB_L01 [Borrelia burgdorferi B31]
 ref|ZP_03087794.1|  hypothetical protein Bbur8_06144 [Borrelia burgdorferi 80a]
 ref|YP_002601169.1|  hypothetical protein BBU64B_SL0001 [Borrelia burgdorferi 64b]
 ref|YP_002606359.1|  hypothetical protein BBU64B_O0001 [Borrelia burgdorferi 64b]
Length=407

 GENE ID: 1194468 BB_P01 | hypothetical protein [Borrelia burgdorferi B31]
(10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   118, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|XP_002371315.1|  hypothetical protein TGME49_017480 [Toxoplasma gondii ME49]
Length=1589

 GENE ID: 7901035 TGME49_017480 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   119, Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 13/30 (43%)

Query  32   PHYN-----YY--------ATLLTLLIAVI  48
            PHY+     YY         TLL  L+ VI
Sbjct  153  PHYDQWYDDYYKDELNLADETLLDVLVGVI  182


 Score = 17.6 bits (34),  Expect = 21511, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  301   SHHQL  305
              HHQL
Sbjct  1391  THHQL  1395


 Score = 15.9 bits (30),  Expect = 80027, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  218  RRRKR  222
            RR KR
Sbjct  312  RRSKR  316


>ref|YP_002776171.1|  lipoprotein [Borrelia burgdorferi 29805]
Length=138

 GENE ID: 7709088 BBU29805_O28 | lipoprotein [Borrelia burgdorferi 29805]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   119, Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 10/34 (29%)

Query  346  MPNG----KTRTSLKTMSR--RKLSQQKEKKATQ  373
            M NG     T TS  T SR  R L  QKE  ATQ
Sbjct  14   MLNGCNSNDTNTS-QTKSRQKRNLT-QKE--ATQ  43


 Score = 16.8 bits (32),  Expect = 41681, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  130  IDRYT  134
            ID YT
Sbjct  127  IDQYT  131


>ref|YP_002725084.1|  hypothetical protein BBU94A_M01 [Borrelia burgdorferi 94a]
Length=407

 GENE ID: 7668330 BBU94A_M01 | hypothetical protein [Borrelia burgdorferi 94a]

 Score = 25.2 bits (52),  Expect =   119, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002725410.1|  hypothetical protein BBU118A_R01 [Borrelia burgdorferi 118a]
Length=408

 GENE ID: 7637603 BBU118A_R01 | hypothetical protein [Borrelia burgdorferi 118a]

 Score = 25.2 bits (52),  Expect =   119, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002724730.1|  hypothetical protein BBU118A_L01 [Borrelia burgdorferi 118a]
 ref|YP_002724900.1|  hypothetical protein BBU94A_W01 [Borrelia burgdorferi 94a]
Length=407

 GENE ID: 7637073 BBU118A_L01 | hypothetical protein [Borrelia burgdorferi 118a]

 Score = 25.2 bits (52),  Expect =   119, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002724814.1|  hypothetical protein BBU118A_ON01 [Borrelia burgdorferi 118a]
Length=407

 GENE ID: 7637205 BBU118A_ON01 | hypothetical protein
[Borrelia burgdorferi 118a]

 Score = 25.2 bits (52),  Expect =   119, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|ZP_03797704.1|  conserved hypothetical protein [Borrelia burgdorferi Bol26]
Length=368

 Score = 25.2 bits (52),  Expect =   120, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  265  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  294


>ref|YP_002474209.1|  hypothetical protein Bbu156a_X01 [Borrelia burgdorferi 156a]
Length=407

 GENE ID: 7276567 Bbu156a_X01 | hypothetical protein [Borrelia burgdorferi 156a]

 Score = 25.2 bits (52),  Expect =   120, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002333806.1|  hypothetical protein BafACA1_S01 [Borrelia afzelii ACA-1]
Length=407

 GENE ID: 7068381 BafACA1_S01 | hypothetical protein [Borrelia afzelii ACA-1]

 Score = 25.2 bits (52),  Expect =   120, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|XP_002370888.1|  hypothetical protein TGME49_015690 [Toxoplasma gondii ME49]
Length=1405

 GENE ID: 7897067 TGME49_015690 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   120, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  264   PVNRRRVEAA  273
             PV R RVEAA
Sbjct  1188  PVSRARVEAA  1197


 Score = 19.3 bits (38),  Expect =  7342, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  217   RRRRKR  222
             RRR KR
Sbjct  1280  RRRSKR  1285


 Score = 18.9 bits (37),  Expect =  8583, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 2/12 (16%)

Query  266  NRRRV--EAARR  275
            N R V  EA RR
Sbjct  577  NWRQVKAEAERR  588


 Score = 17.2 bits (33),  Expect = 27315, Method: Composition-based stats.
 Identities = 8/12 (66%), Positives = 9/12 (75%), Gaps = 1/12 (8%)

Query  269   RVEAARRAQELE  280
             R EAAR A EL+
Sbjct  1061  RGEAAREA-ELQ  1071


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  68   TTNYL  72
            T NYL
Sbjct  920  TANYL  924


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 7/12 (58%), Gaps = 3/12 (25%)

Query  314  GLHSTPDSPAKP  325
            GL   P+S  KP
Sbjct  179  GL---PESATKP  187


 Score = 15.9 bits (30),  Expect = 72335, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 6/12 (50%), Gaps = 6/12 (50%)

Query  219  RRKRVNTKRSSR  230
            RRK      SSR
Sbjct  162  RRK------SSR  167


>ref|YP_002640979.1|  hypothetical protein BBUCA112A_P0001 [Borrelia burgdorferi CA-11.2a]
Length=408

 GENE ID: 7558132 BBUCA112A_P0001 | hypothetical protein
[Borrelia burgdorferi CA-11.2a]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002606276.1|  hypothetical protein BBU64B_V0001 [Borrelia burgdorferi 64b]
Length=407

 GENE ID: 7441557 BBU64B_V0001 | hypothetical protein [Borrelia burgdorferi 64b]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002601125.1|  hypothetical protein BBU64B_R0001 [Borrelia burgdorferi 64b]
Length=407

 GENE ID: 7441330 BBU64B_R0001 | hypothetical protein [Borrelia burgdorferi 64b]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002474327.1|  hypothetical protein Bbu156a_M01 [Borrelia burgdorferi 156a]
 ref|YP_002606400.1|  hypothetical protein BBU64B_M0001 [Borrelia burgdorferi 64b]
Length=408

 GENE ID: 7265231 Bbu156a_M01 | hypothetical protein [Borrelia burgdorferi 156a]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002474572.1|  hypothetical protein Bbu156a_W01 [Borrelia burgdorferi 156a]
Length=408

 GENE ID: 7265472 Bbu156a_W01 | hypothetical protein [Borrelia burgdorferi 156a]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002474528.1|  hypothetical protein Bbu156a_R01 [Borrelia burgdorferi 156a]
Length=408

 GENE ID: 7265430 Bbu156a_R01 | hypothetical protein [Borrelia burgdorferi 156a]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|XP_002369427.1|  hypothetical protein TGME49_053710 [Toxoplasma gondii ME49]
Length=457

 GENE ID: 7899913 TGME49_053710 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query  321  SPAKPEKNG--HAKDHPKIAKIFEIQT--MPNGKT-------RTSLKTMSRRKLSQQKEK  369
                PE  G   AK H  +AK  +     M  GK        R SL     R L +    
Sbjct  191  PAPTPELKGVRLAKHHLRVAKMMDELATKMGPGKDKNMMQLGRESLLHFWMRRLQESRTT  250

Query  370  KATQMLAIVLGVFIIC--WLPFFITHILNIHCD  400
                +L    G   IC   L F       +H +
Sbjct  251  RINALLVEAGGERHICCNSLEFGFIGTAQVHSE  283


>ref|YP_002724617.1|  hypothetical protein BSV1_X55 [Borrelia sp. SV1]
Length=407

 GENE ID: 7668132 BSV1_X55 | hypothetical protein [Borrelia sp. SV1]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|ZP_03087508.1|  hypothetical protein Bbur8_04590 [Borrelia burgdorferi 80a]
Length=408

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002474613.1|  hypothetical protein Bbu156a_S01 [Borrelia burgdorferi 156a]
 ref|YP_002606318.1|  hypothetical protein BBU64B_W0001 [Borrelia burgdorferi 64b]
Length=408

 GENE ID: 7265515 Bbu156a_S01 | hypothetical protein [Borrelia burgdorferi 156a]

 Score = 25.2 bits (52),  Expect =   121, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|ZP_03797693.1|  conserved hypothetical protein [Borrelia burgdorferi Bol26]
Length=431

 Score = 25.2 bits (52),  Expect =   122, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  328  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  357


>ref|YP_002641106.1|  hypothetical protein BBUWI9123_O0001 [Borrelia burgdorferi WI91-23]
Length=408

 GENE ID: 7559236 BBUWI9123_O0001 | hypothetical protein
[Borrelia burgdorferi WI91-23]

 Score = 25.2 bits (52),  Expect =   122, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002333694.1|  hypothetical protein BafACA1_V01 [Borrelia afzelii ACA-1]
Length=407

 GENE ID: 7068174 BafACA1_V01 | hypothetical protein [Borrelia afzelii ACA-1]

 Score = 25.2 bits (52),  Expect =   122, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002333649.1|  hypothetical protein BafACA1_P01 [Borrelia afzelii ACA-1]
Length=407

 GENE ID: 7068128 BafACA1_P01 | hypothetical protein [Borrelia afzelii ACA-1]

 Score = 25.2 bits (52),  Expect =   122, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|ZP_03769882.1|  colicin V production protein A [Borrelia burgdorferi 94a]
Length=162

 Score = 25.2 bits (52),  Expect =   122, Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query  228  SSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEA  272
             S  FR  LR   K      E   L     K    F   RR VE 
Sbjct  22   TSLGFRGFLRGFIKEISGFAEVFVLILLLYKKTEEF---RRFVEP  63


>ref|YP_002724773.1|  hypothetical protein BSV1_S01 [Borrelia sp. SV1]
 ref|YP_002725298.1|  hypothetical protein BSV1_O01 [Borrelia sp. SV1]
Length=408

 GENE ID: 7637135 BSV1_S01 | hypothetical protein [Borrelia sp. SV1]

 Score = 25.2 bits (52),  Expect =   124, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002527784.1|  hypothetical protein BBU72A_X0001 [Borrelia burgdorferi 72a]
 ref|YP_002776230.1|  hypothetical protein BBU29805_X01 [Borrelia burgdorferi 29805]
Length=406

 GENE ID: 7333785 BBU72A_X0001 | hypothetical protein [Borrelia burgdorferi 72a]

 Score = 25.2 bits (52),  Expect =   124, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  303  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  332


>ref|YP_002527677.1|  hypothetical protein BBU72A_N0001 [Borrelia burgdorferi 72a]
 ref|YP_002725041.1|  hypothetical protein BBU94A_O01 [Borrelia burgdorferi 94a]
 ref|YP_002725256.1|  hypothetical protein BBU118A_AB01 [Borrelia burgdorferi 118a]
Length=408

 GENE ID: 7333724 BBU72A_N0001 | hypothetical protein [Borrelia burgdorferi 72a]

 Score = 25.2 bits (52),  Expect =   124, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  305  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  334


>ref|YP_002474485.1|  hypothetical protein BGAPBR_V0001 [Borrelia garinii PBr]
Length=407

 GENE ID: 7265385 BGAPBR_V0001 | hypothetical protein [Borrelia garinii PBr]

 Score = 25.2 bits (52),  Expect =   125, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|XP_002366809.1|  hypothetical protein TGME49_042890 [Toxoplasma gondii ME49]
Length=3149

 GENE ID: 7894945 TGME49_042890 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 25.2 bits (52),  Expect =   127, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 1/10 (10%)

Query  268   RRVEAARRAQ  277
             RRV AARR Q
Sbjct  1799  RRV-AARRSQ  1807


 Score = 20.6 bits (41),  Expect =  2903, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 2/10 (20%)

Query  79   ADLLVATLVM  88
            ADL  A LVM
Sbjct  491  ADL--ASLVM  498


 Score = 18.5 bits (36),  Expect = 12395, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  360   RRKLSQQKE  368
             RR L Q  E
Sbjct  3026  RRRLAQPNE  3034


 Score = 15.9 bits (30),  Expect = 64784, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  267   RRRVE  271
             RR VE
Sbjct  3104  RRQVE  3108


 Score = 15.9 bits (30),  Expect = 75735, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 10/23 (43%)

Query  265  VNR---RRVEAARRA----QELE  280
            V R   RR    RRA    Q L+
Sbjct  956  VKRDFQRRL---RRAYLPRQALQ  975


 Score = 15.9 bits (30),  Expect = 80027, Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query  361  RKLSQQKEKKATQMLA-IVL-GVF  382
            R L    + K  Q+LA I L G F
Sbjct  821  RRLGRREDEKVVQLLAPIFLQGMF  844


 Score = 15.5 bits (29),  Expect = 86131, Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 0/16 (0%)

Query  43    LLIAVIVFGNVLVCMA  58
             LL+A+      L CMA
Sbjct  2500  LLVAIMTESHLLSCMA  2515


 Score = 15.5 bits (29),  Expect = 95290, Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 8/22 (36%)

Query  271   EAARRAQEL------EM--EML  284
             EA   AQ L       M  +ML
Sbjct  1199  EAVKQAQSLAVPLAAAMPRQML  1220


>ref|ZP_03772674.1|  colicin V production protein A [Borrelia sp. SV1]
Length=162

 Score = 25.2 bits (52),  Expect =   127, Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query  228  SSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEA  272
             S  FR  LR   K      E   L     K    F   RR VE 
Sbjct  22   TSLGFRGFLRGFIKEISGFAEVFVLILLLYKKTEEF---RRLVEP  63


>ref|ZP_03087899.1|  hypothetical protein Bbur8_06699 [Borrelia burgdorferi 80a]
Length=406

 Score = 25.2 bits (52),  Expect =   127, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  303  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  332


>ref|YP_710215.1|  colicin V production protein, putative [Borrelia afzelii PKo]
 ref|ZP_03435578.1|  CvpA family protein [Borrelia afzelii ACA-1]
Length=162

 GENE ID: 4227880 BAPKO_0814 | colicin V production protein, putative
[Borrelia afzelii PKo] (10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   127, Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query  228  SSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEA  272
             S  FR  LR   K      E   L     K    F   RR VE 
Sbjct  22   TSLGFRGFLRGFIKEISGFAEVFVLILLLYKKTEEF---RRLVEP  63


>ref|NP_051334.1|  hypothetical protein BB_O01 [Borrelia burgdorferi B31]
Length=407

 GENE ID: 1194642 BB_O01 | hypothetical protein [Borrelia burgdorferi B31]
(10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   127, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002333738.1|  hypothetical protein BafACA1_R01 [Borrelia afzelii ACA-1]
Length=407

 GENE ID: 7068308 BafACA1_R01 | hypothetical protein [Borrelia afzelii ACA-1]

 Score = 25.2 bits (52),  Expect =   128, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|ZP_03675557.1|  conserved hypothetical protein [Borrelia spielmanii A14S]
Length=407

 Score = 25.2 bits (52),  Expect =   128, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_709232.1|  hypothetical protein BAPKO_4028 [Borrelia afzelii PKo]
Length=407

 GENE ID: 4227266 BAPKO_4028 | hypothetical protein [Borrelia afzelii PKo]
(10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   129, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|YP_002776303.1|  hypothetical protein BBUBOL26_X02 [Borrelia burgdorferi Bol26]
 ref|ZP_03797612.1|  conserved hypothetical protein [Borrelia burgdorferi Bol26]
Length=218

 GENE ID: 7721720 BBUBOL26_X02 | hypothetical protein
[Borrelia burgdorferi Bol26]

 Score = 25.2 bits (52),  Expect =   130, Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 6/26 (23%)

Query  15   RQNWSRPFN------GSDGKADRPHY  34
             +   R FN      G DGK DR  Y
Sbjct  115  KEPLTRSFNEQAKGLGNDGKGDRSNY  140


>ref|ZP_03088562.1|  hypothetical protein Bbur8_10427 [Borrelia burgdorferi 80a]
Length=248

 Score = 25.2 bits (52),  Expect =   130, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  145  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  174


>ref|YP_161330.1|  hypothetical protein BGP045 [Borrelia garinii PBi]
Length=407

 GENE ID: 3189871 BGP045 | hypothetical protein [Borrelia garinii PBi]
(10 or fewer PubMed links)

 Score = 25.2 bits (52),  Expect =   130, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  304  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  333


>ref|ZP_03675616.1|  conserved hypothetical protein [Borrelia spielmanii A14S]
Length=340

 Score = 25.2 bits (52),  Expect =   131, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  237  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  266


>ref|XP_002369444.1|  M16 family peptidase, putative [Toxoplasma gondii ME49]
Length=1559

 GENE ID: 7900025 TGME49_053890 | M16 family peptidase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   132, Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 6/19 (31%)

Query  263  FPVNR----R--RVEAARR  275
            FP+ R    R  RVE ARR
Sbjct  284  FPIGRLDQIRSWRVEDARR  302


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  292  RTRYS  296
            RTR+S
Sbjct  10   RTRFS  14


 Score = 16.8 bits (32),  Expect = 45692, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  172   FGLNNAD  178
             FGL +AD
Sbjct  1518  FGLRDAD  1524


 Score = 16.3 bits (31),  Expect = 54407, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  284  LSSTSPPER  292
            LSS SP  R
Sbjct  946  LSSPSPQGR  954


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  216   LRRRRKRV  223
             L RRR  V
Sbjct  1239  LQRRRSSV  1246


>ref|XP_002365519.1|  transporter, major facilitator family domain containing protein 
[Toxoplasma gondii ME49]
Length=2906

 GENE ID: 7893490 TGME49_068020 | transporter, major facilitator family domain
containing protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   132, Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 1/13 (7%)

Query  360  RRKLSQQKEKKAT  372
            RR L QQKE K T
Sbjct  758  RRTL-QQKEEKTT  769


 Score = 21.4 bits (43),  Expect =  1405, Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 4/18 (22%)

Query  359  SRRKL----SQQKEKKAT  372
            S R L     Q+KE K T
Sbjct  328  SPRRLFSRWTQHKERKTT  345


 Score = 21.4 bits (43),  Expect =  1834, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 2/13 (15%)

Query  267   RRRVE--AARRAQ  277
             R RVE  A RR Q
Sbjct  2114  RTRVEDEAERRGQ  2126


 Score = 20.6 bits (41),  Expect =  2984, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  267   RRRVE  271
             RRRVE
Sbjct  1808  RRRVE  1812


 Score = 19.7 bits (39),  Expect =  4724, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  188  AFVVY  192
            AFVVY
Sbjct  604  AFVVY  608


 Score = 19.3 bits (38),  Expect =  6885, Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 12/24 (50%)

Query  267   RRRVEA-AR-----------RAQE  278
             RRR E  AR           RA+E
Sbjct  1280  RRRLEGRARPPRFASCGENGRAEE  1303


 Score = 18.9 bits (37),  Expect = 10603, Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 18/39 (46%)

Query  261   GSF--P--VNRRRVEAA--RR----AQELEMEMLSSTSP  289
             GSF  P  V R    AA  R     AQ+L    LS T P
Sbjct  1938  GSFFPPQSVAR----AAELRQGHSHAQQL----LSDTAP  1968


 Score = 18.5 bits (36),  Expect = 13098, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  294  RYSPIPP  300
            RY P PP
Sbjct  879  RYTPDPP  885


 Score = 18.0 bits (35),  Expect = 14759, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 7/14 (50%)

Query  322   PAK-------PEKN  328
             PAK       PEKN
Sbjct  2268  PAKEKEEATLPEKN  2281


 Score = 16.8 bits (32),  Expect = 38728, Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 14/26 (53%)

Query  26   DGKADR--PHYNYYATLLTLLIAVIV  49
            D K DR  PH            AV+V
Sbjct  805  DEKEDREVPH------------AVVV  818


 Score = 16.3 bits (31),  Expect = 60748, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  348   NGKTRTSL  355
             NG TR  L
Sbjct  1162  NGTTRSDL  1169


 Score = 16.3 bits (31),  Expect = 63022, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  352   RTSLKTMSRR  361
             R S KT  RR
Sbjct  1352  RSSQKTEERR  1361


 Score = 15.9 bits (30),  Expect = 70368, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  226   KRSSRA  231
             KR  RA
Sbjct  1747  KRTARA  1752


 Score = 15.9 bits (30),  Expect = 71673, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  308  PDPSHHGLH  316
            PDP    LH
Sbjct  882  PDPPRESLH  890


 Score = 15.9 bits (30),  Expect = 83023, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  379   LGVF  382
             LGVF
Sbjct  2757  LGVF  2760


>ref|XP_002367614.1|  hypothetical protein TGME49_003320 [Toxoplasma gondii ME49]
Length=5507

 GENE ID: 7894038 TGME49_003320 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   134, Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 15/43 (34%)

Query  267   RRRVE----AARRAQELEMEMLSSTS-----PPERTRYSPIPP  300
             RRR E      R   ELE   LSS S     P + T   P PP
Sbjct  2379  RRRQEFPSPSGR---ELERASLSSSSGGEKEPSDPT---PAPP  2415


 Score = 24.4 bits (50),  Expect =   200, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  217   RRRRKR  222
             RRRRKR
Sbjct  4622  RRRRKR  4627


 Score = 19.7 bits (39),  Expect =  4856, Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 9/25 (36%), Gaps = 13/25 (52%)

Query  267   RRRVE-------------AARRAQE  278
             RRR E             A RR QE
Sbjct  3146  RRRTEDGEDAKRGEEWKEAVRRRQE  3170


 Score = 19.3 bits (38),  Expect =  7410, Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 7/21 (33%)

Query  316   HSTP---D----SPAKPEKNG  329
             HS P   D    SP   EK G
Sbjct  4385  HSSPMSVDFPGGSPSNAEKTG  4405


 Score = 19.3 bits (38),  Expect =  8049, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  314   GLHSTP  319
             GLH TP
Sbjct  5365  GLHATP  5370


 Score = 18.5 bits (36),  Expect = 14358, Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 10/37 (27%), Gaps = 25/37 (67%)

Query  3     PLNLS----------WYDDDLERQN---------WSR  20
             PL LS          W      RQ          WSR
Sbjct  5464  PLHLSLNRLGRLTEDW------RQHQIRLLRRLQWSR  5494


 Score = 18.0 bits (35),  Expect = 18742, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 1/7 (14%)

Query  46    AV-IVFG  51
             AV IVFG
Sbjct  2944  AVSIVFG  2950


 Score = 17.6 bits (34),  Expect = 20545, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  274   RRAQELEMEML  284
             R  QE E E L
Sbjct  4763  RWSQEVETERL  4773


 Score = 17.2 bits (33),  Expect = 29398, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 1/10 (10%)

Query  284   LSSTSPP-ER  292
             L S  PP ER
Sbjct  3895  LTSVAPPGER  3904


 Score = 16.8 bits (32),  Expect = 38373, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  39    TLLTLL  44
             TLLT L
Sbjct  3214  TLLTFL  3219


 Score = 16.8 bits (32),  Expect = 44860, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  49    VFGNV  53
             VFG+V
Sbjct  2111  VFGDV  2115


 Score = 16.3 bits (31),  Expect = 51489, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  216   LRRRR  220
             L RRR
Sbjct  1202  LHRRR  1206


 Score = 16.3 bits (31),  Expect = 57490, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  218   RRRKR  222
             RR KR
Sbjct  3042  RRWKR  3046


 Score = 15.9 bits (30),  Expect = 81511, Method: Composition-based stats.
 Identities = 6/17 (35%), Positives = 10/17 (58%), Gaps = 0/17 (0%)

Query  11    DDLERQNWSRPFNGSDG  27
             +++E  NW  P +G  G
Sbjct  2624  ENMETANWRKPGDGASG  2640


 Score = 15.5 bits (29),  Expect = 86926, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  271   EAARR  275
             EA RR
Sbjct  3839  EAGRR  3843


 Score = 15.5 bits (29),  Expect = 96170, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  72    LIVS  75
             LIVS
Sbjct  2535  LIVS  2538


 Score = 15.5 bits (29),  Expect = 97953, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query  40    LLTLL-IAVIVFG  51
             LL LL   V VFG
Sbjct  2508  LLDLLGQDVFVFG  2520


>ref|XP_002366798.1|  hypothetical protein TGME49_042780 [Toxoplasma gondii ME49]
Length=4029

 GENE ID: 7898300 TGME49_042780 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   134, Method: Composition-based stats.
 Identities = 8/11 (72%), Positives = 8/11 (72%), Gaps = 0/11 (0%)

Query  360   RRKLSQQKEKK  370
             RRKLSQ  E K
Sbjct  3682  RRKLSQSSERK  3692


 Score = 21.4 bits (43),  Expect =  1554, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 5/17 (29%)

Query  278   ELEMEMLSSTSPPERTR  294
             E E + LS     ERTR
Sbjct  1653  EVEVQVLS-----ERTR  1664


 Score = 19.7 bits (39),  Expect =  4724, Method: Composition-based stats.
 Identities = 7/9 (77%), Positives = 7/9 (77%), Gaps = 2/9 (22%)

Query  270   VEA--ARRA  276
             VEA  ARRA
Sbjct  2586  VEAEEARRA  2594


 Score = 18.5 bits (36),  Expect = 11101, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  286  STSPP  290
            STSPP
Sbjct  672  STSPP  676


 Score = 18.5 bits (36),  Expect = 11204, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  437   FLKILH  442
             FLK LH
Sbjct  3106  FLKFLH  3111


 Score = 18.5 bits (36),  Expect = 12859, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  217  RRRRKRV  223
            R RR RV
Sbjct  793  RQRRERV  799


 Score = 18.0 bits (35),  Expect = 14624, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  337   IAKIFEI  343
             I  IFEI
Sbjct  3738  ISPIFEI  3744


 Score = 18.0 bits (35),  Expect = 17096, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  269   RVEAARRAQE  278
             R E  RRA E
Sbjct  3450  RAELERRARE  3459


 Score = 17.6 bits (34),  Expect = 24917, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  94    LEVVGE  99
             LEV GE
Sbjct  2929  LEVLGE  2934


 Score = 17.6 bits (34),  Expect = 25613, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  318  TPDSPAKP  325
            TP SP  P
Sbjct  661  TPGSPPRP  668


 Score = 17.2 bits (33),  Expect = 28863, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  432   EFRKAF  437
             EFR AF
Sbjct  2798  EFRGAF  2803


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  218   RRRK  221
             RRRK
Sbjct  1831  RRRK  1834


 Score = 16.8 bits (32),  Expect = 39446, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  24    GSDGKA  29
             G DGKA
Sbjct  2126  GPDGKA  2131


 Score = 16.8 bits (32),  Expect = 42066, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  197   SFYVPF  202
             SF+V F
Sbjct  3112  SFFVAF  3117


 Score = 16.3 bits (31),  Expect = 52444, Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 16/34 (47%)

Query  271   EA-ARRAQELEMEMLSSTSPPERTRYSPIPPSHH  303
             EA  RR  +L  E+L               P HH
Sbjct  1410  EALSRRVADLAPELL---------------PTHH  1428


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  286  STSPP  290
            S SPP
Sbjct  7    SSSPP  11


 Score = 15.5 bits (29),  Expect = 86131, Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 9/16 (56%), Gaps = 3/16 (18%)

Query  269  RVEAARRAQE-LEMEM  283
            R E  RRA E  E EM
Sbjct  915  RQE--RRAPERPEEEM  928


 Score = 15.5 bits (29),  Expect = 86131, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 4/14 (28%)

Query  349   GKT-RTSLKTMSRR  361
             GKT R  L   SRR
Sbjct  2248  GKTPRRGL---SRR  2258


 Score = 15.5 bits (29),  Expect = 92700, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  61   REKALQT  67
            REK L+ 
Sbjct  401  REKELES  407


>ref|XP_002367689.1|  YT521-B-like family domain-containing protein [Toxoplasma gondii 
ME49]
Length=496

 GENE ID: 7897439 TGME49_004070 | YT521-B-like family domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   136, Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 31/116 (26%), Gaps = 20/116 (17%)

Query  169  PLLFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVTLL---VYIKIYIVLRR-RRKRVN  224
                G    D     I NPA  +Y        P   T L    YI  Y   R   R R  
Sbjct  265  AQHGGGGAEDAWGPRIVNPAIQIY--------PLDLTTLTYDGYIRAYQTSRAYWRRRTE  316

Query  225  TKRSSRAF------RAHLRAPLKGNCT-HPEDMKLCTV-IMKSNGSFPVNRRRVEA  272
              RS          R + R  L      H E     T       G  P N    +A
Sbjct  317  ASRSEEERQEAAKKREQKRTRLLAARNLHTEGERAPTQHAKRTEGEAPENQSKGDA  372


 Score = 23.1 bits (47),  Expect =   516, Method: Compositional matrix adjust.
 Identities = 18/83 (21%), Positives = 21/83 (25%), Gaps = 5/83 (6%)

Query  267  RRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSH-HQLTLPDPSHHGLHSTPDSPAKP  325
            RRR EA R     E E        E  R         H      P +H      + P   
Sbjct  312  RRRTEASRS----EEERQEAAKKREQKRTRLLAARNLHTEGERAPTQHAKRTEGEAPENQ  367

Query  326  EKNGHAKDHPKIAKIFEIQTMPN  348
             K    K   K     E +    
Sbjct  368  SKGDAKKPRVKMEREDEREDAAG  390


 Score = 15.9 bits (30),  Expect = 78570, Method: Compositional matrix adjust.
 Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 0/27 (0%)

Query  350  KTRTSLKTMSRRKLSQQKEKKATQMLA  376
             T  S     R       E K T +LA
Sbjct  314  RTEASRSEEERQEAAKKREQKRTRLLA  340


>ref|XP_002370470.1|  uvrD/REP helicase domain-containing protein [Toxoplasma gondii 
ME49]
Length=2851

 GENE ID: 7898758 TGME49_077550 | uvrD/REP helicase domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   139, Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 7/22 (31%)

Query  3    PL-NLSWYDDDLERQ-NWSRPF  22
            PL  L W     +RQ NW  PF
Sbjct  845  PLAKLDW-----QRQTNWTHPF  861


 Score = 20.2 bits (40),  Expect =  4192, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 12/23 (52%)

Query  353   TSLKTMSRRKLSQQKEKKATQML  375
             T LK   RR          TQML
Sbjct  1607  TALK---RR---------GTQML  1617


 Score = 18.9 bits (37),  Expect =  8427, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  404   PPVLYSAF  411
             P VL SAF
Sbjct  1504  PQVLHSAF  1511


 Score = 18.0 bits (35),  Expect = 15172, Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 14/25 (56%)

Query  296   SPI--PPSHHQLTL-------PDPS  311
             SP+  PPS     L       PDPS
Sbjct  1568  SPVTSPPS-----LWYRPDRPPDPS  1587


 Score = 18.0 bits (35),  Expect = 18232, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 2/14 (14%)

Query  362   KLSQQKEKKATQML  375
              LS   EKK T +L
Sbjct  1867  RLS--REKKETRLL  1878


 Score = 17.6 bits (34),  Expect = 21119, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  356   KTMSRRK  362
             KT+ RRK
Sbjct  1963  KTLERRK  1969


 Score = 16.3 bits (31),  Expect = 49631, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  182  CIIANP  187
            C+IA P
Sbjct  746  CVIAGP  751


 Score = 16.3 bits (31),  Expect = 51489, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  215  VLRR  218
            VLRR
Sbjct  941  VLRR  944


 Score = 16.3 bits (31),  Expect = 54909, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  202   FIVTL  206
             FIV L
Sbjct  1469  FIVAL  1473


 Score = 16.3 bits (31),  Expect = 56444, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  19   SRPFNGS  25
            S PFN S
Sbjct  469  SIPFNAS  475


 Score = 16.3 bits (31),  Expect = 57490, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  275   RAQE  278
             RAQE
Sbjct  1722  RAQE  1725


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  124  NLCAI  128
            NLC I
Sbjct  744  NLCVI  748


 Score = 15.9 bits (30),  Expect = 64191, Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 14/26 (53%)

Query  274  RR-AQEL-------------EMEMLS  285
            RR A+EL             EM +LS
Sbjct  781  RRGAEELRTRVVDGFSSTLAEMRLLS  806


 Score = 15.9 bits (30),  Expect = 68455, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  149   KRRVTVM  155
             KRR T M
Sbjct  1610  KRRGTQM  1616


 Score = 15.9 bits (30),  Expect = 80027, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 1/7 (14%)

Query  217   RRRR-KR  222
             R RR KR
Sbjct  1343  RHRRLKR  1349


 Score = 15.5 bits (29),  Expect = 88538, Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 13/37 (35%)

Query  267   RR----RVEAA---RRAQ---ELEME-MLSSTSPPER  292
             RR    R  AA   RR +   E + E +L ST  P R
Sbjct  2545  RRGGDPR--AAEEKRREETKAEQDEEKLLPSTCAPKR  2579


>ref|XP_002370327.1|  hypothetical protein TGME49_105340 [Toxoplasma gondii ME49]
Length=1838

 GENE ID: 7901278 TGME49_105340 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   139, Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 9/26 (34%)

Query  96   VVGEW---KF-----SRIH-CDIFVT  112
            VVGEW   KF      R H   IF+T
Sbjct  782  VVGEWIQEKFEDSVAPRSHYSAIFIT  807


 Score = 19.7 bits (39),  Expect =  5084, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 2/10 (20%)

Query  62    EK--ALQTTT  69
             EK  AL+TTT
Sbjct  1435  EKGCALETTT  1444


 Score = 19.7 bits (39),  Expect =  5472, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  291   ERTRYSPIPP  300
             ER R SP PP
Sbjct  1676  ERPRRSPTPP  1685


 Score = 18.0 bits (35),  Expect = 16329, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  46   AVIVFG  51
            AVI FG
Sbjct  598  AVILFG  603


 Score = 18.0 bits (35),  Expect = 16940, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  216   LRRRR-KR  222
             LRR R KR
Sbjct  1659  LRRSRPKR  1666


 Score = 17.6 bits (34),  Expect = 23365, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  357  TMSRRKLS  364
            TM R  LS
Sbjct  980  TMGRSMLS  987


 Score = 17.2 bits (33),  Expect = 32825, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  219  RRKRVNTKR  227
            RRK V T R
Sbjct  857  RRKVVETDR  865


 Score = 15.9 bits (30),  Expect = 64191, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  108  DIFVTL  113
            D+F TL
Sbjct  720  DVFLTL  725


 Score = 15.9 bits (30),  Expect = 75735, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 3/11 (27%)

Query  296  SPIPPSHHQLT  306
            SP PP    LT
Sbjct  110  SPLPP---RLT  117


 Score = 15.9 bits (30),  Expect = 83023, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  268   RRVEAA  273
             RR +AA
Sbjct  1549  RRLDAA  1554


>ref|ZP_03088407.1|  hypothetical protein Bbur8_09592 [Borrelia burgdorferi 80a]
Length=324

 Score = 24.8 bits (51),  Expect =   140, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  221  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  250


>ref|XP_002371772.1|  phosphatidylinositol N-acetylglucosaminyltransferase subunit, 
putative [Toxoplasma gondii ME49]
Length=348

 GENE ID: 7895205 TGME49_099040 | phosphatidylinositol
N-acetylglucosaminyltransferase subunit, putative [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   143, Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query  269  RVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEK  327
            R    RR Q L  ++L         RYS  PP    L   D      H     PA  EK
Sbjct  17   RTAGFRRRQKLSEDLLRLSRSR---RYSDCPPPGPLLSGGDRLPDEVHPA---PARWEK  69


 Score = 16.8 bits (32),  Expect = 41300, Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 0/20 (0%)

Query  66   QTTTNYLIVSLAVADLLVAT  85
            QT     +V L V  LLV T
Sbjct  189  QTFSEDTVVCLSVVSLLVHT  208


 Score = 15.9 bits (30),  Expect = 84562, Method: Compositional matrix adjust.
 Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 0/15 (0%)

Query  11  DDLERQNWSRPFNGS  25
           +DL R   SR +   
Sbjct  29  EDLLRLSRSRRYSDC  43


>ref|XP_002370960.1|  tRNA synthetase, putative [Toxoplasma gondii ME49]
Length=1762

 GENE ID: 7898476 TGME49_016500 | tRNA synthetase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   147, Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 4/18 (22%)

Query  61   REKALQTTTNYLIVSLAV  78
            RE ALQ  TN+  V LAV
Sbjct  703  REAALQ--TNF--VGLAV  716


 Score = 22.7 bits (46),  Expect =   712, Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 12/30 (40%)

Query  257   MKSNG-SFP----VNR-----RR--VEAAR  274
             MK NG  FP    V R     RR  VE  R
Sbjct  1389  MKNNGEEFPCPQGVSRKSVLKRRCEVEIDR  1418


 Score = 18.9 bits (37),  Expect =  9070, Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 17/57 (29%), Gaps = 25/57 (43%)

Query  258   KSNGSFPVNRRR----VEAARR---------------AQEL-----EMEM-LSSTSP  289
              S GS    RRR     E  R                A EL     EME   S  SP
Sbjct  1605  RSSGSRATSRRRSEELAETGRSEKNTETTEELEKSDEADELEASVREMEIVISHASP  1661


 Score = 18.9 bits (37),  Expect = 10506, Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 8/21 (38%)

Query  52   NVLVCM-----AVSREKALQT  67
            NVL  M      VSRE   QT
Sbjct  380  NVLEGMQARGSTVSRE---QT  397


 Score = 18.5 bits (36),  Expect = 12395, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 0/9 (0%)

Query  75   SLAVADLLV  83
            SLA  +LLV
Sbjct  103  SLALQELLV  111


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  216  LRRR  219
            LRRR
Sbjct  2    LRRR  5


 Score = 15.9 bits (30),  Expect = 65985, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 6/12 (50%), Gaps = 6/12 (50%)

Query  102   FSRIHCDIFVTL  113
             FSR      VTL
Sbjct  1268  FSR------VTL  1273


>ref|XP_002371544.1|  hypothetical protein TGME49_020190 [Toxoplasma gondii ME49]
Length=560

 GENE ID: 7897891 TGME49_020190 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   148, Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query  226  KRSSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELE  280
            KR SR  R        G      D  LC V M SN    +   R+E A R ++L+
Sbjct  428  KRPSREQR--------GESDDQGDGSLCSV-MRSNVPVEIPEGRIEQAIRREQLD  473


 Score = 18.0 bits (35),  Expect = 18065, Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query  145  RYSSK-RRVTVMISIVWVLSFTISCPLLFGLNNA  177
            R+SS  RR    I    V S T    L    N+ 
Sbjct  50   RFSSSIRRLKAEINSLSVSSATGDSRLEAAANDG  83


 Score = 15.5 bits (29),  Expect = 91852, Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 5/29 (17%)

Query  222  RVNTKRSSRA-----FRAHLRAPLKGNCT  245
            RV TK    A      R  L AP  G+C 
Sbjct  235  RVATKHLKEAAEELDLRSALAAPASGDCA  263


>ref|XP_002371195.1|  hypothetical protein TGME49_097750 [Toxoplasma gondii ME49]
Length=2614

 GENE ID: 7901459 TGME49_097750 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   148, Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 3/13 (23%)

Query  10   DD--DLERQ-NWS  19
            DD  DLERQ  WS
Sbjct  541  DDVGDLERQPTWS  553


 Score = 18.5 bits (36),  Expect = 12282, Method: Composition-based stats.
 Identities = 8/12 (66%), Positives = 8/12 (66%), Gaps = 3/12 (25%)

Query  74    VSLAV---ADLL  82
             VSLAV   A LL
Sbjct  1868  VSLAVSPPATLL  1879


 Score = 18.0 bits (35),  Expect = 18232, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  83    VATLVM  88
             VATLV+
Sbjct  1761  VATLVL  1766


 Score = 16.8 bits (32),  Expect = 38022, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  289   PPER  292
             PPER
Sbjct  1337  PPER  1340


 Score = 16.8 bits (32),  Expect = 38022, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 3/13 (23%)

Query  80    DLLVATL---VMP  89
             DLL  TL   V+P
Sbjct  1619  DLLSSTLSLVVLP  1631


 Score = 15.9 bits (30),  Expect = 64191, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  269   RVEAARRAQ  277
             R E AR  Q
Sbjct  1007  RLEDARQPQ  1015


 Score = 15.5 bits (29),  Expect = 91012, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  194   SIVSFY  199
             S VSF+
Sbjct  1521  SLVSFF  1526


>ref|XP_002371101.1|  splicing factor, arginine/serine-rich 4, putative [Toxoplasma 
gondii ME49]
Length=1461

 GENE ID: 7898933 TGME49_013640 | splicing factor, arginine/serine-rich 4,
putative [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   148, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 1/10 (10%)

Query  274   RRAQELEMEM  283
             RRAQE EM M
Sbjct  1043  RRAQEREM-M  1051


 Score = 19.3 bits (38),  Expect =  6110, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 1/11 (9%)

Query  263   FPVNR-RRVEA  272
             FPV    RVEA
Sbjct  1353  FPVEQGQRVEA  1363


 Score = 19.3 bits (38),  Expect =  7478, Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 5/24 (20%)

Query  119  TASILNLCAISIDRYTAVAMPMLY  142
             ASI   C IS+  +T      LY
Sbjct  601  SASIVASCSISVSSFTT-----LY  619


 Score = 18.0 bits (35),  Expect = 19443, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  217   RRRR  220
             RRRR
Sbjct  1193  RRRR  1196


 Score = 17.2 bits (33),  Expect = 28078, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  216  LRRRRK  221
            LR RR 
Sbjct  354  LRKRRR  359


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 3/10 (30%)

Query  296  SP---IPPSH  302
            SP   IP SH
Sbjct  648  SPFAGIPRSH  657


 Score = 15.9 bits (30),  Expect = 76434, Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 14/30 (46%)

Query  360   RRKLSQQKEK-------------KATQMLA  376
             RR   Q+ E               A Q+LA
Sbjct  1042  RRR-AQEREMMNTLDNASADRIDRASQLLA  1070


 Score = 15.9 bits (30),  Expect = 83023, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  317   STPD  320
             STPD
Sbjct  1203  STPD  1206


 Score = 15.5 bits (29),  Expect = 85343, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  176   NADQNE  181
             NA+ NE
Sbjct  1301  NAEDNE  1306


 Score = 15.5 bits (29),  Expect = 86926, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  217   RRRRKR  222
             RR R R
Sbjct  1207  RRIRRR  1212


 Score = 15.5 bits (29),  Expect = 90180, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  324   KPEK  327
             KPEK
Sbjct  1307  KPEK  1310


>ref|YP_161431.1|  hypothetical protein BGP145 [Borrelia garinii PBi]
Length=341

 GENE ID: 3189820 BGP145 | hypothetical protein [Borrelia garinii PBi]
(10 or fewer PubMed links)

 Score = 24.8 bits (51),  Expect =   149, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  307  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  336


>ref|XP_002365725.1|  UBA/TS-N domain-containing protein [Toxoplasma gondii ME49]
Length=5435

 GENE ID: 7899162 TGME49_070590 | UBA/TS-N domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   153, Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 10/23 (43%)

Query  262   SFPVNRRRVEA----ARRAQELE  280
              FP   RR+EA    ARR   LE
Sbjct  5162  TFP---RRIEASQMEARR---LE  5178


 Score = 21.8 bits (44),  Expect =  1258, Method: Composition-based stats.
 Identities = 8/11 (72%), Positives = 8/11 (72%), Gaps = 1/11 (9%)

Query  402   NIPPVLYSAFT  412
             N PPVL SA T
Sbjct  3264  NLPPVL-SALT  3273


 Score = 20.6 bits (41),  Expect =  2984, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  224   NTKRSSR  230
             NT RSSR
Sbjct  3704  NTERSSR  3710


 Score = 20.6 bits (41),  Expect =  3182, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  81   LLVATL  86
            LLVATL
Sbjct  651  LLVATL  656


 Score = 20.2 bits (40),  Expect =  4270, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  214   IVLRRRRK  221
             I L RRR 
Sbjct  3437  IALKRRRR  3444


 Score = 19.3 bits (38),  Expect =  7478, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 3/13 (23%)

Query  359   SRRKLSQQKEKKA  371
             SRR   +QKE  A
Sbjct  4981  SRR---EQKEERA  4990


 Score = 19.3 bits (38),  Expect =  7975, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 1/10 (10%)

Query  96    VVGEWK-FSR  104
             VV +WK  SR
Sbjct  4839  VVSDWKLLSR  4848


 Score = 18.5 bits (36),  Expect = 10899, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 4/14 (28%)

Query  268  RR----VEAARRAQ  277
            RR    VE  RRA+
Sbjct  630  RRTTGQVENDRRAE  643


 Score = 18.0 bits (35),  Expect = 16032, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  273   ARRAQE  278
             ARR QE
Sbjct  4826  ARRQQE  4831


 Score = 17.6 bits (34),  Expect = 20171, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  294   RYSPIPP  300
             R SP+PP
Sbjct  1808  RLSPVPP  1814


 Score = 17.2 bits (33),  Expect = 27065, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 1/9 (11%)

Query  147  SSK-RRVTV  154
            S K RRV V
Sbjct  155  STKDRRVNV  163


 Score = 17.2 bits (33),  Expect = 31932, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  233  RAHLR  237
            R HLR
Sbjct  894  RSHLR  898


 Score = 16.8 bits (32),  Expect = 35983, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  8     WYDDDLER  15
             W+DD L R
Sbjct  3055  WFDDMLAR  3062


 Score = 16.8 bits (32),  Expect = 39446, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  259   SNGSFP  264
              +GSFP
Sbjct  4451  TDGSFP  4456


 Score = 16.8 bits (32),  Expect = 43641, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  83    VATLVM  88
             VATL M
Sbjct  3560  VATLQM  3565


 Score = 16.3 bits (31),  Expect = 55927, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  359   SRRKLSQ  365
             SR  LSQ
Sbjct  4073  SRSQLSQ  4079


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 1/9 (11%)

Query  372   TQMLAIVLG  380
             TQ+LA  LG
Sbjct  4134  TQLLAT-LG  4141


 Score = 15.9 bits (30),  Expect = 75042, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  216  LRRRRK  221
            LR RR 
Sbjct  358  LRSRRR  363


 Score = 15.5 bits (29),  Expect = 95290, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  292   RTRYSPI  298
             RT Y P+
Sbjct  5307  RTHYWPV  5313


>ref|XP_002370145.1|  hypothetical protein TGME49_093430 [Toxoplasma gondii ME49]
Length=411

 GENE ID: 7900003 TGME49_093430 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.8 bits (51),  Expect =   155, Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query  86   LVMPWVVYLEVVGEWKFSRIHCDIFVT---LDVMMCTASILNLCAIS  129
            LV  W V   V     FS +  D  +T   L V      IL   A S
Sbjct  104  LVVVWLVCTGVLLIFAFSPVNADLGITSMLLGVFIGIIGILSVSAKS  150


>ref|XP_002369000.1|  hypothetical protein TGME49_036150 [Toxoplasma gondii ME49]
Length=126

 GENE ID: 7900129 TGME49_036150 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   158, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  22  FNGSDGKADR  31
           FNGSD K DR
Sbjct  66  FNGSDNKRDR  75


 Score = 20.6 bits (41),  Expect =  3153, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  257  MKSNGSFP  264
            MKS  SFP
Sbjct  1    MKSRSSFP  8


>ref|YP_002641255.1|  hypothetical protein BSPA14S_A0052 [Borrelia spielmanii A14S]
Length=312

 GENE ID: 7558347 BSPA14S_A0052 | hypothetical protein
[Borrelia spielmanii A14S]

 Score = 24.8 bits (51),  Expect =   158, Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 0/39 (0%)

Query  383  IICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAV  421
            I C      T + N    CN P  L      LGYV+  V
Sbjct  159  IFCMNELGKTRVINESFACNSPKGLIEHLIRLGYVDFVV  197


>ref|XP_002368497.1|  glutamic acid-rich protein, putative [Toxoplasma gondii ME49]
Length=986

 GENE ID: 7896506 TGME49_091130 | glutamic acid-rich protein, putative
[Toxoplasma gondii ME49]

 Score = 24.8 bits (51),  Expect =   161, Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 17/59 (28%), Gaps = 2/59 (3%)

Query  179  QNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRAHLR  237
            Q+       A  V   I          LLVY     +     KRV   R S      LR
Sbjct  359  QDPSARRYEAATVAAEILESLEQRAENLLVY--NTRIVSQMKKRVESGRTSSGQKGRLR  415


>ref|XP_002366507.1|  hypothetical protein TGME49_038150 [Toxoplasma gondii ME49]
Length=349

 GENE ID: 7901192 TGME49_038150 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.8 bits (51),  Expect =   161, Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 39/121 (32%), Gaps = 11/121 (9%)

Query  26   DGKADRPHYNYYATLLT--LLIAVIVF---GNVLVCMAVSREKALQTTTNYLIVSLAVAD  80
             G  D P     AT LT    +A + F   GN         + A         V L  A 
Sbjct  7    GGEFDNPALSCWATSLTGQAVVALVLFLLAGNPHLPKDPVDDAAIPRVASSTFVGLGTAH  66

Query  81   LLVATL--VMPWVVYLEVVGEWKFSRIHCDI-FVTLDVMMCTASILNLCAISIDRYTAVA  137
            L V      +  V +L  VG        C I F  L V   TA IL       D Y   A
Sbjct  67   LVVCAICAALCLVGFL-LVGFFQLPLLICGIAFQILCVV--TAGILGQMLTNLDSYKSTA  123

Query  138  M  138
            +
Sbjct  124  L  124


>ref|XP_002371030.1|  hypothetical protein TGME49_012810 [Toxoplasma gondii ME49]
Length=4817

 GENE ID: 7893611 TGME49_012810 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   162, Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 4/21 (19%)

Query  228   SSRAFRAHLRAPLKGNC--TH  246
              SR +  HLR P  G C  TH
Sbjct  3051  TSRSYSVHLRQP--GSCERTH  3069


 Score = 23.5 bits (48),  Expect =   385, Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 3/19 (15%)

Query  262   SFPVNRRRVEAARRAQELE  280
             SFP  RRR E  R   E E
Sbjct  3203  SFPEKRRR-EETRK--EVE  3218


 Score = 22.3 bits (45),  Expect =   773, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  296   SPIPPSH  302
             S IPPSH
Sbjct  4431  SAIPPSH  4437


 Score = 21.4 bits (43),  Expect =  1784, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  217   RRRRKRVNT  225
             RRRRK   T
Sbjct  3386  RRRRKKTQT  3394


 Score = 20.2 bits (40),  Expect =  3859, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 3/15 (20%)

Query  309  DPSHHGLHSTPDSPA  323
            DPS +GL   P SPA
Sbjct  367  DPSSQGL---PISPA  378


 Score = 19.3 bits (38),  Expect =  7012, Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 12/27 (44%)

Query  300   PSHHQLTLPDPSHHGLHSTP---DSPA  323
             PSHH+          L+S P    SPA
Sbjct  3604  PSHHE---------ALQSPPRPTASPA  3621


 Score = 18.9 bits (37),  Expect =  9851, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 5/17 (29%)

Query  269   RVEAAR-----RAQELE  280
             RV+ AR     RA E E
Sbjct  4670  RVQVAREEHTERADEAE  4686


 Score = 18.0 bits (35),  Expect = 18570, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  284   LSSTSP  289
             L STSP
Sbjct  2157  LASTSP  2162


 Score = 17.6 bits (34),  Expect = 24018, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 0/14 (0%)

Query  57    MAVSREKALQTTTN  70
             M V   KA Q  TN
Sbjct  3434  MEVPNKKAIQNMTN  3447


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 2/10 (20%)

Query  268   RRVEAARRAQ  277
             RR E  RR Q
Sbjct  4057  RRAE--RRQQ  4064


 Score = 17.2 bits (33),  Expect = 34368, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  290  PERTR  294
            PER R
Sbjct  667  PERAR  671


 Score = 16.8 bits (32),  Expect = 35983, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  14    ERQNWSR  20
             ER++ SR
Sbjct  3507  EREDRSR  3513


 Score = 16.8 bits (32),  Expect = 39810, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  418   NSAVNP  423
             NSAV P
Sbjct  2626  NSAVAP  2631


 Score = 16.8 bits (32),  Expect = 46114, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  366   QKEKKATQ  373
             Q EKK TQ
Sbjct  3763  QSEKK-TQ  3769


 Score = 16.3 bits (31),  Expect = 57490, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  287   TSPPE  291
              SPPE
Sbjct  3727  SSPPE  3731


 Score = 15.9 bits (30),  Expect = 67209, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  343   IQTMPN  348
             IQ M N
Sbjct  3442  IQNMTN  3447


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  360   RRKLSQQKEKK  370
             RRK  Q+ E K
Sbjct  4007  RRKQGQHAEEK  4017


 Score = 15.9 bits (30),  Expect = 77852, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 1/6 (16%)

Query  10    DDDLER  15
             DDD ER
Sbjct  4053  DDD-ER  4057


 Score = 15.9 bits (30),  Expect = 83023, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  14   ERQNWS  19
            ER  WS
Sbjct  220  ERPQWS  225


 Score = 15.5 bits (29),  Expect = 85343, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  61    REKAL  65
             RE AL
Sbjct  4551  RERAL  4555


 Score = 15.5 bits (29),  Expect = 86131, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 6/13 (46%), Gaps = 6/13 (46%)

Query  313  HGLHSTPDSPAKP  325
            HG       PAKP
Sbjct  235  HG------APAKP  241


 Score = 15.5 bits (29),  Expect = 90180, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  291   ERTRY  295
             ER RY
Sbjct  4020  ERQRY  4024


 Score = 15.5 bits (29),  Expect = 97058, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  225   TKRSS  229
             TKR S
Sbjct  3117  TKRNS  3121


>ref|XP_002366617.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=461

 GENE ID: 7893948 TGME49_039780 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   168, Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query  43   LLIAVIVFGNVLVCMAVSRE-----KALQTTTNYLIVSLAVADLLVATLVMPW-VVYLEV  96
            L   V  +G       VS E       L  T  +LI SL  AD   A   +PW  ++   
Sbjct  326  LYNGVDAYGAPVYIKEVSDELVMLEDGLRITNIFLICSLPDAD--GASGQLPWAAIFPHE  383

Query  97   VGEWKFSR  104
                 F R
Sbjct  384  SNARDFER  391


 Score = 17.6 bits (34),  Expect = 24463, Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 3/18 (16%)

Query  374  MLAIVL---GVFIICWLP  388
            ML   L    +F IC LP
Sbjct  348  MLEDGLRITNIFLICSLP  365


>ref|XP_002371151.1|  hypothetical protein TGME49_097210 [Toxoplasma gondii ME49]
Length=1429

 GENE ID: 7898986 TGME49_097210 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   170, Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 29/47 (61%)

Query  267  RRR-VEA------------ARR-AQ---------------ELEMEML  284
            RRR VEA            ARR AQ               E EME L
Sbjct  247  RRRLVEAQARRDAARDAEFARREAQLEARLEALREAVKEREREMEKL  293


 Score = 17.6 bits (34),  Expect = 24463, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  49   VFGNVL  54
            VFG VL
Sbjct  461  VFGGVL  466


 Score = 17.2 bits (33),  Expect = 26329, Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 16/60 (26%), Gaps = 40/60 (66%)

Query  163  SFTISCPL---LFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRR  219
            SF   CPL   L GL            P F               TLL         RRR
Sbjct  21   SFSL-CPLCSSLLGL------------PVF---------------TLL---------RRR  43


 Score = 16.8 bits (32),  Expect = 42066, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  271  EAARR  275
            +AARR
Sbjct  587  DAARR  591


 Score = 16.3 bits (31),  Expect = 60748, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  206  LLVY  209
            LLVY
Sbjct  860  LLVY  863


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  61   REKAL  65
            REK L
Sbjct  442  REKSL  446


>ref|XP_002368354.1|  TPR domain-containing protein [Toxoplasma gondii ME49]
Length=1553

 GENE ID: 7898099 TGME49_089190 | TPR domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.8 bits (51),  Expect =   173, Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 5/19 (26%)

Query  149   KRRVTVMISIVWVLSFTIS  167
             KRR     S V  LSF IS
Sbjct  1040  KRR-----SMVRRLSFSIS  1053


 Score = 17.6 bits (34),  Expect = 25613, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  363   LSQQKE  368
             L QQKE
Sbjct  1464  LEQQKE  1469


 Score = 17.2 bits (33),  Expect = 31640, Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 9/23 (39%)

Query  271   EAA-------RR--AQELEMEML  284
             EAA       RR  A+EL +E L
Sbjct  1102  EAAECLYAADRRADAEELLLERL  1124


 Score = 16.3 bits (31),  Expect = 51018, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 6/13 (46%), Gaps = 5/13 (38%)

Query  268  RRV-----EAARR  275
            RR      EA RR
Sbjct  484  RRLLHDATEASRR  496


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  187  PAFVVYSS  194
            P F V+SS
Sbjct  397  PVFPVFSS  404


 Score = 15.5 bits (29),  Expect = 98857, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  77   AVADLLVA  84
            A+A L VA
Sbjct  615  AIAQLVVA  622


>ref|XP_002370622.1|  hypothetical protein TGME49_018340 [Toxoplasma gondii ME49]
Length=147

 GENE ID: 7901580 TGME49_018340 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.8 bits (51),  Expect =   175, Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 3/16 (18%)

Query  182  CIIANPAFVVYSSIVS  197
            CII  P   VYS I+S
Sbjct  74   CII-EPS--VYSNIIS  86


>ref|ZP_03087927.1|  hypothetical protein Bbur8_06859 [Borrelia burgdorferi 80a]
Length=290

 Score = 24.8 bits (51),  Expect =   175, Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 8/32 (25%)

Query  15   RQNWSRPFN------GSDGKADRPHYNYYATL  40
             +   R FN      G DGK DR   NYY  L
Sbjct  221  KEPLTRSFNEQAKGLGNDGKGDRS--NYYDFL  250


>ref|XP_002371458.1|  hypothetical protein TGME49_080640 [Toxoplasma gondii ME49]
Length=5811

 GENE ID: 7899769 TGME49_080640 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   178, Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 21/46 (45%)

Query  267   RRR--------VEAA----RRAQELEME----MLSS-----TSPPE  291
             RRR        VE      RRAQE + E    M SS      SP E
Sbjct  3836  RRRPRCRSSLAVESSALKPRRAQEEDAEGSEGMPSSRISCRASPLE  3881


 Score = 22.3 bits (45),  Expect =  1009, Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 3/17 (17%)

Query  277   QELEME---MLSSTSPP  290
             Q+ EME     SST PP
Sbjct  1209  QDREMEYENAVSSTGPP  1225


 Score = 21.4 bits (43),  Expect =  1457, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  323   AKPEKN  328
             AKPEKN
Sbjct  1362  AKPEKN  1367


 Score = 21.0 bits (42),  Expect =  2047, Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 3/19 (15%)

Query  270   VEAARRAQELEMEMLSSTS  288
             +EA RR ++L  +   STS
Sbjct  5290  IEAGRRSEDLTTD---STS  5305


 Score = 20.6 bits (41),  Expect =  2850, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  212   IYIVLRRRRKR  222
             IY  L RRR R
Sbjct  4264  IY--LPRRRSR  4272


 Score = 19.7 bits (39),  Expect =  5038, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 8/10 (80%), Gaps = 1/10 (10%)

Query  317  STPDSP-AKP  325
            STP+SP A P
Sbjct  598  STPESPDASP  607


 Score = 19.7 bits (39),  Expect =  5472, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  14    ERQNWS  19
             ERQ WS
Sbjct  3771  ERQRWS  3776


 Score = 19.3 bits (38),  Expect =  6822, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  260   NGSFP  264
             NGSFP
Sbjct  3120  NGSFP  3124


 Score = 19.3 bits (38),  Expect =  6885, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  95    EVVGE-WK  101
             EVV E WK
Sbjct  3691  EVVSEAWK  3698


 Score = 18.9 bits (37),  Expect =  8742, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  401   CNIPPVLYSAF  411
             CN PP L  AF
Sbjct  1562  CNAPPTL--AF  1570


 Score = 18.5 bits (36),  Expect = 11411, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  285   SSTSPPE  291
             SS SPP+
Sbjct  1203  SSASPPQ  1209


 Score = 18.5 bits (36),  Expect = 12859, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  239   PLK--GNCTHP  247
             PLK  G C HP
Sbjct  2572  PLKHEGACDHP  2582


 Score = 17.6 bits (34),  Expect = 19622, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 3/14 (21%)

Query  217   RRR---RKRVNTKR  227
             R R   R R N KR
Sbjct  1008  RSRAVERRRTNEKR  1021


 Score = 17.6 bits (34),  Expect = 22316, Method: Composition-based stats.
 Identities = 4/9 (44%), Positives = 8/9 (88%), Gaps = 0/9 (0%)

Query  173  GLNNADQNE  181
            G ++AD+N+
Sbjct  886  GIDDADEND  894


 Score = 17.6 bits (34),  Expect = 22522, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  265   VNRRRVEAARR  275
             V RRR    RR
Sbjct  1012  VERRRTNEKRR  1022


 Score = 17.6 bits (34),  Expect = 23151, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  267   RRRVEAARR  275
             RR  E A R
Sbjct  4518  RRQAEEAKR  4526


 Score = 17.2 bits (33),  Expect = 27567, Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 7/24 (29%)

Query  216   LRRRRK------RVNTKRSSRAFR  233
             LR  RK      RV T  S   FR
Sbjct  1512  LRHHRKLAGLLRRVQTLHSP-GFR  1534


 Score = 17.2 bits (33),  Expect = 29669, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  12    DLERQNW  18
             DL+R+ W
Sbjct  2691  DLDRELW  2697


 Score = 17.2 bits (33),  Expect = 32227, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  128  ISIDRY  133
            I I RY
Sbjct  619  IAIQRY  624


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  285   SSTSPPER  292
             SSTS P R
Sbjct  2756  SSTSVPPR  2763


 Score = 16.8 bits (32),  Expect = 44450, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 3/12 (25%)

Query  218   RRRKRVNTKRSS  229
             RRR R    RSS
Sbjct  3836  RRRPRC---RSS  3844


 Score = 16.3 bits (31),  Expect = 48282, Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 7/15 (46%), Gaps = 4/15 (26%)

Query  267   RRRVEAAR----RAQ  277
             R R  AA     RAQ
Sbjct  5342  RWRAKAAKPAFARAQ  5356


 Score = 16.3 bits (31),  Expect = 55927, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  215   VLRRR  219
             V RRR
Sbjct  3834  VVRRR  3838


 Score = 16.3 bits (31),  Expect = 56444, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  360   RRKL  363
             RRKL
Sbjct  4599  RRKL  4602


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  386   WLPFF  390
             W PFF
Sbjct  2043  WRPFF  2047


 Score = 15.9 bits (30),  Expect = 68455, Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 2/15 (13%)

Query  322   PAKPEK--NGHAKDH  334
             P K  K  NG AK++
Sbjct  5724  PEKANKNANGEAKEQ  5738


 Score = 15.9 bits (30),  Expect = 71673, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  178   DQNECIIA  185
             D+N CI A
Sbjct  5802  DENVCIAA  5809


 Score = 15.9 bits (30),  Expect = 72335, Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 15/33 (45%)

Query  260   NGSFP-------VNRRRVE--------AARRAQ  277
             +G FP       V  RR E        AA RA+
Sbjct  3236  DGDFPSLRLVLTVEGRRMERPGFDGGQAANRAE  3268


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 2/14 (14%)

Query  55    VCMAVSREKALQTT  68
             VC   SRE   +TT
Sbjct  1186  VC--ASRETETETT  1197


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 4/13 (30%)

Query  236   LRA----PLKGNC  244
             LRA    PL G C
Sbjct  1245  LRAALPLPLSGPC  1257


 Score = 15.9 bits (30),  Expect = 73676, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  356   KTMSRR  361
              T SRR
Sbjct  3408  RTVSRR  3413


 Score = 15.9 bits (30),  Expect = 81511, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  11    DDLERQ  16
             D L+RQ
Sbjct  5215  DALQRQ  5220


 Score = 15.5 bits (29),  Expect = 87728, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  84   ATLVMPW  90
            A L +PW
Sbjct  523  ASLPLPW  529


 Score = 15.5 bits (29),  Expect = 92700, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  1     MDPLNLS  7
             +DP +LS
Sbjct  2864  LDPVDLS  2870


 Score = 15.5 bits (29),  Expect = 94419, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  120   ASILN  124
             AS+LN
Sbjct  2732  ASVLN  2736


 Score = 15.5 bits (29),  Expect = 97058, Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 20/38 (52%)

Query  5    NLSWYDDDLERQ---------NW-------SRP-FNGS  25
            NLS    DL+            W       SRP F  S
Sbjct  548  NLSR---DLDKRLSTPELSGASWAPPAHSVSRPAFSSS  582


>ref|XP_002367579.1|  hypothetical protein TGME49_002970 [Toxoplasma gondii ME49]
Length=2196

 GENE ID: 7893991 TGME49_002970 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   179, Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 22/44 (50%)

Query  233  RAH-----LRAPLKGNCT-----------HPED-MKLCTVIMKS  259
            RAH     LRA +KG  T            PE  MKL   I+K 
Sbjct  216  RAHRESSNLRAQMKG--TPYNVAEEEQNFNPESLMKL---ILKT  254


 Score = 19.7 bits (39),  Expect =  5323, Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 11/28 (39%)

Query  10   DDDLERQNWS----RPFNGSDG-KADRP  32
            DDD E   W     RP  G D   ADRP
Sbjct  710  DDD-E---WGIGTDRP--GGDAWIADRP  731


 Score = 19.7 bits (39),  Expect =  5522, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 3/9 (33%)

Query  274  RRAQELEME  282
            RR   LEME
Sbjct  53   RR---LEME  58


 Score = 18.5 bits (36),  Expect = 12859, Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 8/21 (38%)

Query  361  RKLSQQ-------KEKKATQM  374
            R LS Q       KE K  QM
Sbjct  148  RELSDQAYQLNEVKE-KVAQM  167


 Score = 18.0 bits (35),  Expect = 17900, Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 7/26 (26%)

Query  268   RRVEAARRAQEL----EMEML-SSTS  288
             R VEAA   +E     E E+L   TS
Sbjct  2172  RHVEAA--TEEVGPVTEEELLKAATS  2195


 Score = 17.6 bits (34),  Expect = 22522, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  38    ATLLTL  43
             ATLL L
Sbjct  1665  ATLLSL  1670


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  60   SREKALQT  67
            SRE AL T
Sbjct  692  SREGALPT  699


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 4/7 (57%), Gaps = 0/7 (0%)

Query  288   SPPERTR  294
              PP R R
Sbjct  2088  TPPNRSR  2094


 Score = 16.3 bits (31),  Expect = 50089, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 8/13 (61%), Gaps = 2/13 (15%)

Query  17   NW--SRPFNGSDG  27
            +W  S  F GS+G
Sbjct  445  DWASSQEFGGSEG  457


 Score = 15.9 bits (30),  Expect = 71018, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  25    SDGKAD  30
              DGKA+
Sbjct  2146  TDGKAE  2151


 Score = 15.9 bits (30),  Expect = 81511, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  318   TPDS  321
             TPDS
Sbjct  1887  TPDS  1890


>ref|XP_002369408.1|  hypothetical protein TGME49_053520 [Toxoplasma gondii ME49]
Length=1276

 GENE ID: 7899894 TGME49_053520 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   181, Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 21/111 (18%)

Query  78    VADLLVAT-------LVMPWVVYLE---VVGEWKFSRIHCDIFVTLDVMMCTASILNLCA  127
             + +LL AT       LV     +LE     G+W   R   D     D     AS    C 
Sbjct  902   IGELLLATRPEATASLVHAFLCFLESSFAAGDWERPR---DLLE--DTEARHASRKRKCP  956

Query  128   ISIDRYTAVAMPMLYNTR----YSSKRRVTVMISIVWVLSFTISCPLLFGL  174
              S D    V   +    R    +S K  V  +          +   LL  L
Sbjct  957   ESEDK--QVRKELFEHARQPPLFSWKHAVKALTEDKFCPGLSVPSRLLLVL  1005


 Score = 17.2 bits (33),  Expect = 29943, Method: Compositional matrix adjust.
 Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 8/23 (34%)

Query  90    WVVYLEVVGEWKFSRIH--CDIF  110
             WV +      W FSR    C++ 
Sbjct  1136  WVSF------WRFSRFREACNVL  1152


 Score = 17.2 bits (33),  Expect = 31932, Method: Compositional matrix adjust.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  215  VLRRRRKRVNTK  226
            VL RRR    TK
Sbjct  128  VLQRRRREQSTK  139


 Score = 17.2 bits (33),  Expect = 31932, Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query  360  RRKLSQQKEKKATQMLAIVLGVFIIC--WLPFFITHILNIHC  399
            RR     KEK A  +      V       L   I  +L  H 
Sbjct  132  RRREQSTKEKRAENLKTTLHAVLRAGTNRLYALINRVLHRHS  173


 Score = 16.3 bits (31),  Expect = 48282, Method: Compositional matrix adjust.
 Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 0/16 (0%)

Query  206  LLVYIKIYIVLRRRRK  221
            LL       +LRRRR 
Sbjct  24   LLEEEEAREILRRRRD  39


 Score = 15.9 bits (30),  Expect = 71673, Method: Compositional matrix adjust.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  36  YYATLLTLL  44
           Y A LL LL
Sbjct  63  YEANLLSLL  71


>ref|XP_002367892.1|  membrane-associated calcium-binding protein, related [Toxoplasma 
gondii ME49]
Length=335

 GENE ID: 7894346 TGME49_029480 | membrane-associated calcium-binding protein,
related [Toxoplasma gondii ME49]

 Score = 24.4 bits (50),  Expect =   183, Method: Compositional matrix adjust.
 Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 7/57 (12%)

Query  132  RYTAVAMPMLYNTRYSSKRRVTVMISIVWVLSFTISCPLLFGLNNADQNECIIANPA  188
             +   AMP L            V       L        LF L + +Q+  I    A
Sbjct  53   QFAEAAMPKLSGEKLAELMQMDVKDIKERMLA-------LFDLIDTNQDNTIDTEEA  102


>ref|XP_002365504.1|  hypothetical protein TGME49_064140 [Toxoplasma gondii ME49]
Length=4532

 GENE ID: 7899607 TGME49_064140 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   183, Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 6/18 (33%)

Query  300   PSHHQLTLPDPSHHGLHS  317
             PSH    LP PSH  LHS
Sbjct  2238  PSH----LP-PSH-ALHS  2249


 Score = 21.8 bits (44),  Expect =  1086, Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 4/26 (15%)

Query  223   VNTKRSSRAFRAHLRAPLKGNCTHPE  248
             V T R   A RA L  PL     HPE
Sbjct  1888  VSTRR--QALRAFLPEPLRS--LHPE  1909


 Score = 21.8 bits (44),  Expect =  1247, Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 8/18 (44%)

Query  267   RRR-VE-------AARRA  276
             RRR VE       A RRA
Sbjct  1262  RRRQVEELEGPEDASRRA  1279


 Score = 21.8 bits (44),  Expect =  1379, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 2/14 (14%)

Query  315  LHS--TPDSPAKPE  326
            LH   TPDSP   E
Sbjct  406  LHTFATPDSPTNNE  419


 Score = 19.7 bits (39),  Expect =  5944, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  286   STSPPERTR  294
             STS  ERT 
Sbjct  1141  STSSRERTK  1149


 Score = 18.0 bits (35),  Expect = 16032, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  277   QELEMEM  283
             +EL+M M
Sbjct  2667  EELQMKM  2673


 Score = 17.6 bits (34),  Expect = 22316, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  265   VNRRRVEA  272
             V RR  EA
Sbjct  3126  VERRKLEA  3133


 Score = 17.6 bits (34),  Expect = 23151, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  405   PVLYSAF  411
             PVLY  F
Sbjct  1743  PVLYDDF  1749


 Score = 16.8 bits (32),  Expect = 40548, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 2/11 (18%)

Query  130   IDRYT--AVAM  138
             I RYT    AM
Sbjct  2776  IQRYTEDTGAM  2786


 Score = 16.8 bits (32),  Expect = 41300, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 8/16 (50%), Gaps = 4/16 (25%)

Query  268   RRVEAARRA----QEL  279
             RR EA   A    QEL
Sbjct  3409  RRPEASEKAPMSSQEL  3424


 Score = 16.8 bits (32),  Expect = 43641, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  20    RPFNGSDGK  28
             RP  G DGK
Sbjct  2346  RPSSGVDGK  2354


 Score = 15.9 bits (30),  Expect = 67209, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  285   SSTSPPE  291
             S T PP+
Sbjct  1185  SATGPPD  1191


 Score = 15.9 bits (30),  Expect = 67209, Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 9/20 (45%)

Query  2     DPLNLSWYDDDL-----ERQ  16
             DPL L     DL     E Q
Sbjct  3253  DPLTLT----DLLEQVVEQQ  3268


 Score = 15.9 bits (30),  Expect = 69725, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  326   EKNGH  330
             EK GH
Sbjct  2881  EKSGH  2885


 Score = 15.5 bits (29),  Expect = 86131, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  423   PIIYTT  428
             P IYT 
Sbjct  4085  PAIYTS  4090


 Score = 15.5 bits (29),  Expect = 91852, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  349  GKTR  352
            GKTR
Sbjct  996  GKTR  999


 Score = 15.5 bits (29),  Expect = 93555, Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 11/20 (55%)

Query  306   TLPDPSHHGLHSTPDSPAKP  325
             TL +PS           AKP
Sbjct  3721  TLQEPS-----------AKP  3729


>ref|XP_002371750.1|  hypothetical protein TGME49_100270 [Toxoplasma gondii ME49]
Length=510

 GENE ID: 7895183 TGME49_100270 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.4 bits (50),  Expect =   184, Method: Compositional matrix adjust.
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 8/72 (11%)

Query  59   VSREKALQTTTNYLIVSLAVADLLVATLVMPWVVY---LEVVGEW---KFSRIHCDIFVT  112
            + R+  LQ T +Y  +S    ++    L             VG+W   K       IF  
Sbjct  27   IDRQRNLQVTADYTLISRGLVNMNHVELEASRAPEELPAPAVGDWVESKAAHQDAQIFRA  86

Query  113  --LDVMMCTASI  122
               +   C   I
Sbjct  87   KVVERRRCPENI  98


>ref|XP_002366795.1|  hypothetical protein TGME49_042750 [Toxoplasma gondii ME49]
Length=3900

 GENE ID: 7901159 TGME49_042750 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   184, Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 20/46 (43%)

Query  288  SPPE-------RT--RYSPIPPSHHQ--LTLPDPSH---HGLHSTP  319
            SPPE       RT  R       H+Q  L L +PS     GLH  P
Sbjct  116  SPPESCTGAEKRTLLR------MHQQALLALSNPSDAISAGLHASP  155


 Score = 22.3 bits (45),  Expect =   840, Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 15/31 (48%)

Query  270   VEAAR----RA--Q---------ELEMEMLS  285
             VEAAR    RA  Q         ELE E L 
Sbjct  1874  VEAARSCLERAKSQGLLKKLTATELEKEELT  1904


 Score = 21.4 bits (43),  Expect =  1484, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  274   RRAQELE  280
             RR QELE
Sbjct  1421  RRIQELE  1427


 Score = 20.6 bits (41),  Expect =  3011, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 0/9 (0%)

Query  272   AARRAQELE  280
             AA  AQ+LE
Sbjct  3546  AASKAQDLE  3554


 Score = 20.2 bits (40),  Expect =  3686, Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 9/27 (33%)

Query  266   NRRR---VEAARRAQE-----LEME-M  283
              RRR   +E  RR  E     LE++ M
Sbjct  1716  HRRRMEQIEEQRRQREEPVHALELQRM  1742


 Score = 18.9 bits (37),  Expect = 10220, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  78    VADLLVA  84
             VA LLVA
Sbjct  1501  VAALLVA  1507


 Score = 18.5 bits (36),  Expect = 11411, Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 13/29 (44%)

Query  267   RRRVEAA------------RRAQE-LEME  282
             RR  EAA            RR +E LE E
Sbjct  2100  RRQHEAAVQNLRSDLLTGQRRLEEKLEQE  2128


 Score = 18.0 bits (35),  Expect = 17900, Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 12/26 (46%)

Query  264  PVNRR-----RVEAARRAQELEMEML  284
            PV  R       EAAR       +ML
Sbjct  777  PVKQRADGNWQTEAAR-------QML  795


 Score = 18.0 bits (35),  Expect = 18742, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  79    ADLLV  83
             ADLLV
Sbjct  1290  ADLLV  1294


 Score = 17.2 bits (33),  Expect = 26572, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  368   EKKATQ  373
             E KATQ
Sbjct  3312  EQKATQ  3317


 Score = 17.2 bits (33),  Expect = 34053, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 4/11 (36%)

Query  12    DLE--RQNWSR  20
             DLE  RQ  SR
Sbjct  3552  DLERNRQ--SR  3560


 Score = 17.2 bits (33),  Expect = 34685, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 10/23 (43%)

Query  266   NRRRVEAAR---R-------AQE  278
              R R EA R   R       AQE
Sbjct  2281  HRQREEAERCFSREKKALMEAQE  2303


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 3/12 (25%)

Query  269   RVEAARR---AQ  277
             RV A RR   AQ
Sbjct  3813  RVRASRRHAEAQ  3824


 Score = 16.3 bits (31),  Expect = 47840, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 2/10 (20%)

Query  57    MAVSREKALQ  66
             MA  RE  LQ
Sbjct  1025  MA--REEVLQ  1032


 Score = 16.3 bits (31),  Expect = 49177, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  267   RRRVEAARR  275
             RR  E  RR
Sbjct  3084  RRQEEETRR  3092


 Score = 16.3 bits (31),  Expect = 52444, Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 5/20 (25%)

Query  342  EIQTMP-----NGKTRTSLK  356
            E QT P       K R  LK
Sbjct  884  EMQTFPEEPVDHEKLRSALK  903


 Score = 16.3 bits (31),  Expect = 55927, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  267   RRRVE  271
             RRR E
Sbjct  3742  RRRTE  3746


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  351   TRTSLKTMSR  360
             TR  LKT  R
Sbjct  3841  TREALKTQER  3850


 Score = 16.3 bits (31),  Expect = 60748, Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 13/32 (40%)

Query  269  RVEAARRAQELEMEMLSST-SP-PERT-RYSP  297
            RV  AR          SST SP P  T R SP
Sbjct  657  RVIVAR----------SSTVSPCPAPTARRSP  678


 Score = 15.9 bits (30),  Expect = 69087, Method: Composition-based stats.
 Identities = 3/6 (50%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  11    DDLERQ  16
             ++L+RQ
Sbjct  2853  EELQRQ  2858


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  296  SPIPP  300
            SP PP
Sbjct  154  SPLPP  158


 Score = 15.5 bits (29),  Expect = 90180, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 1/7 (14%)

Query  361   RKLS-QQ  366
             R LS QQ
Sbjct  1098  RRLSRQQ  1104


 Score = 15.5 bits (29),  Expect = 97058, Method: Composition-based stats.
 Identities = 3/6 (50%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  11    DDLERQ  16
             ++LER+
Sbjct  2876  EELERH  2881


>ref|XP_002365602.1|  hypothetical protein TGME49_069090 [Toxoplasma gondii ME49]
Length=1533

 GENE ID: 7901111 TGME49_069090 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   186, Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 3/14 (21%)

Query  227  RSSRAFR--AH-LR  237
            R SR FR  AH LR
Sbjct  468  RASRSFREAAHELR  481


 Score = 20.2 bits (40),  Expect =  3754, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  17  NWSRPFNGSD  26
           +WSRP+ G D
Sbjct  87  DWSRPYVGVD  96


 Score = 18.9 bits (37),  Expect =  8505, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 3/15 (20%)

Query  26   DGKAD--RPH-YNYY  37
            DGKA+  R   YN Y
Sbjct  136  DGKAESSRSRTYNNY  150


 Score = 18.5 bits (36),  Expect = 12859, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  120   ASILNL  125
             AS+LNL
Sbjct  1279  ASVLNL  1284


 Score = 18.0 bits (35),  Expect = 16329, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  119   TASIL  123
             TASIL
Sbjct  1261  TASIL  1265


 Score = 17.6 bits (34),  Expect = 21910, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  161  VLSFTI  166
            VLS TI
Sbjct  15   VLSITI  20


 Score = 16.8 bits (32),  Expect = 35983, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  24    GSDGKADR  31
             GS+G  DR
Sbjct  1101  GSEGSVDR  1108


 Score = 16.8 bits (32),  Expect = 44450, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  290  PERT  293
            PERT
Sbjct  38   PERT  41


 Score = 16.8 bits (32),  Expect = 46540, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 2/10 (20%)

Query  318  TPDSPAKPEK  327
            TP SPA  EK
Sbjct  187  TPPSPA--EK  194


 Score = 15.9 bits (30),  Expect = 67829, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  273  ARRAQ  277
            ARR Q
Sbjct  97   ARRGQ  101


 Score = 15.9 bits (30),  Expect = 69725, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  54    LVCMAVSR  61
             LVC   SR
Sbjct  1315  LVCAGASR  1322


 Score = 15.9 bits (30),  Expect = 80766, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 3/12 (25%)

Query  356   KTM--SRRKLSQ  365
             KT+  SRR L Q
Sbjct  1364  KTLQSSRR-LRQ  1374


>ref|XP_002364531.1|  hypothetical protein TGME49_113200 [Toxoplasma gondii ME49]
Length=644

 GENE ID: 7896038 TGME49_113200 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.4 bits (50),  Expect =   186, Method: Compositional matrix adjust.
 Identities = 13/65 (20%), Positives = 15/65 (23%), Gaps = 1/65 (1%)

Query  308  PDPSHHGLHSTPDSPAKPEKNGHAKDHPKI-AKIFEIQTMPNGKTRTSLKTMSRRKLSQQ  366
             D     L  T       E            A  F         T   +     R   +Q
Sbjct  10   ADAARGPLRGTQGDEQTAERKETERARAQENADTFNTRSAKMSETVVNMREKEGREKGEQ  69

Query  367  KEKKA  371
            KEKK 
Sbjct  70   KEKKG  74


>ref|ZP_03436098.1|  GlpE protein [Borrelia afzelii ACA-1]
Length=124


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   186, Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query  199  YVPFIVT---LLVYIKIYIVLRRRR  220
            YV FIV    L  YI  +IVLR  R
Sbjct  3    YVKFIVLVVLLFFYIWFFIVLRMKR  27


 Score = 15.5 bits (29),  Expect = 92700, Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 18/63 (28%), Gaps = 26/63 (41%)

Query  323  AKPEKNGHAKDHPKIAKIFEIQTMPNGKT-------RTSLKTMSRRK---------LSQQ  366
            AK +K G           FE Q    GK           LK M             + Q 
Sbjct  69   AKKDKLGD----------FESQIIVYGKSFNKSYEAKKVLKSMGFKNVFVAGTLKDMPQM  118

Query  367  KEK  369
            KEK
Sbjct  119  KEK  121


>ref|YP_073204.1|  colicin V production protein, putative [Borrelia garinii PBi]
Length=162

 GENE ID: 2957210 BG0789 | colicin V production protein, putative
[Borrelia garinii PBi] (10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   186, Method: Compositional matrix adjust.
 Identities = 12/52 (23%), Positives = 14/52 (26%), Gaps = 0/52 (0%)

Query  228  SSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQEL  279
             S  FR  LR   K      E   L     K    F +    +      Q L
Sbjct  22   TSLGFRGFLRGFIKEISGFAEVFVLIILLYKKTEEFRILVKPIVELSYIQAL  73


 Score = 15.9 bits (30),  Expect = 70368, Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query  355  LKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLPFFITHIL--NIHCDCNIPPVLY-SAF  411
            L  +    +SQ K      ML  VLG        F I  I    IH      P  +    
Sbjct  87   LQSLIESIMSQLKLVFFNRMLGLVLGL----LEAFGIIAIVVYIIHSQQIFKPEYFLKES  142

Query  412  TWLGYVNSAVN  422
              L Y N  + 
Sbjct  143  KLLDYLNPGIS  153


>ref|ZP_03773208.1|  di-trans,poly-cis-decaprenylcistransferase [Borrelia sp. SV1]
Length=230

 Score = 24.4 bits (50),  Expect =   188, Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 48/141 (34%), Gaps = 32/141 (22%)

Query  31   RPHYNYYATLLTLLIAVIVFGNVLVCMAVSRE--------KALQTTTNYLIVSLAVA---  79
            R  +++Y       I +IV G+V      SRE               N LI  LA+    
Sbjct  83   RAEFDFYEKNG---IKIIVSGDV---ESLSREVKSSIKDSISFSKNFNNLILNLAINYGG  136

Query  80   --DLLVATLVMPWVVY---LEVVGEWKFSRIHCD-IFVTLDVMMCTAS-------ILNLC  126
              + L A  V   V     LE   E  FS    +     LD +  T          L   
Sbjct  137  RNEILRA--VKKFVSSDFDLESLNENIFSSFLDNPELPDLDLLIRTGGNIRISNFFLWRI  194

Query  127  AISIDRYTAVAMPMLYNTRYS  147
            A S   +  V  P  Y+TRYS
Sbjct  195  AYSELIFSNVLWPEYYDTRYS  215


>ref|YP_072956.1|  phenylalanyl-tRNA synthetase subunit beta [Borrelia garinii PBi]
Length=566

 GENE ID: 2957705 pheT | phenylalanyl-tRNA synthetase subunit beta
[Borrelia garinii PBi] (10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   188, Method: Compositional matrix adjust.
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query  176  NADQNECIIANPAFVVYSSIVSFYV--PFIVTLLVYIKIYIVLRRRR  220
            +A +      N AF      +SF      + TL  Y  I I+LR   
Sbjct  467  DAAEGTSTFTNLAFLMSGKEISFNEINSIVATLFYYLNIEIILRESK  513


 Score = 18.0 bits (35),  Expect = 14759, Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 25/92 (27%), Gaps = 22/92 (23%)

Query  251  KLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDP  310
            KLC        S+   RRRV          M M  S        Y    P H    L   
Sbjct  131  KLCQ-------SYGQKRRRV---------AMGMYNSNFIKFPISYVASSPNHKFVPL---  171

Query  311  SHHGLHSTPDSPAKPEKNGHAKDHPKIAKIFE  342
               G+          EK     +   I K F+
Sbjct  172  ---GMDCELSLLEINEKHPKGLEYSYIVKNFD  200


 Score = 16.8 bits (32),  Expect = 39085, Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query  93   YLEVVGEWKFSRIHCDIFVTLD-VMMCTASIL--------NLCAISIDRYTAVAMPMLYN  143
            Y E+  + K S I   IF  L   +      L         LC         VAM M YN
Sbjct  91   YGEILVDNKMSQIRPFIFGFLAKGLIINDRMLEALIQFQEKLCQSYGQKRRRVAMGM-YN  149

Query  144  TRY  146
              +
Sbjct  150  SNF  152


>ref|XP_002365129.1|  2OG-Fe(II) oxygenase family oxidoreductase, putative [Toxoplasma 
gondii ME49]
Length=1658

 GENE ID: 7895490 TGME49_059150 | 2OG-Fe(II) oxygenase family oxidoreductase,
putative [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   190, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  145  RYSSKRRVTV  154
            RY  KRR TV
Sbjct  119  RYCGKRRATV  128


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 8/13 (61%), Gaps = 0/13 (0%)

Query  280  EMEMLSSTSPPER  292
            E++  S  SP ER
Sbjct  176  ELDRHSCVSPAER  188


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 6/27 (22%)

Query  217  RRRRKRVNTKRSSRAF----RAHLRAP  239
            RR  KR     SS AF    RA   AP
Sbjct  682  RRQPKRGGKPQSSAAFQRLTRA--SAP  706


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 8/14 (57%), Gaps = 5/14 (35%)

Query  266   NRRRVEAA--RRAQ  277
             NR   EAA   RA+
Sbjct  1029  NR---EAAEGKRAE  1039


>ref|ZP_03435347.1|  conserved hypothetical protein [Borrelia afzelii ACA-1]
Length=205

 Score = 24.4 bits (50),  Expect =   190, Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query  288  SPPERTRYSPIPPSHHQLTLPDPSHH--GLHSTPDS--PAKPEKNGHAKDHPKIAKIFEI  343
               + T Y      H  L L     H   L  T +S     PEKNG   +  K  K + I
Sbjct  76   TKEQWTKYKLLFKMHVNLLLVKQNLHLGDLFDTRNSYFFKTPEKNGIILNLEKAEKLYKI  135


>ref|XP_002370756.1|  dopey, N-terminal domain-containing protein [Toxoplasma gondii 
ME49]
Length=3198

 GENE ID: 7896854 TGME49_014230 | dopey, N-terminal domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   191, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  281  MEMLSSTSPP  290
            M  LSSTSPP
Sbjct  1    MSSLSSTSPP  10


 Score = 20.2 bits (40),  Expect =  3895, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  77    AVADLL  82
             AVADLL
Sbjct  997   AVADLL  1002


 Score = 18.9 bits (37),  Expect = 10506, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  324   KPEKN  328
             KPEKN
Sbjct  2944  KPEKN  2948


 Score = 18.0 bits (35),  Expect = 15453, Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 11/29 (37%)

Query  59    VSREKALQTTTNYLIVS-LAVADLLVATL  86
             VSR K          VS L VA+ L+A L
Sbjct  1516  VSRAKE---------VSCL-VAEPLIAAL  1534


 Score = 17.6 bits (34),  Expect = 23365, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 4/14 (28%)

Query  38    ATLLT--L--LIAV  47
             AT+LT  L  LI V
Sbjct  2063  ATMLTALLPPLISV  2076


 Score = 17.6 bits (34),  Expect = 24463, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  354   SLKTMS  359
             SLKT+S
Sbjct  2214  SLKTLS  2219


 Score = 16.8 bits (32),  Expect = 37675, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 3/10 (30%)

Query  410  AFTWLGYVNS  419
            AF   GYV S
Sbjct  237  AF---GYVSS  243


 Score = 16.3 bits (31),  Expect = 51964, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  262  SFPVNRRR  269
            SF   RRR
Sbjct  953  SFSPERRR  960


 Score = 16.3 bits (31),  Expect = 53416, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  288   SPPERTRYSP  297
             SP ER R SP
Sbjct  1363  SPAERHRGSP  1372


 Score = 16.3 bits (31),  Expect = 61309, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 8/17 (47%), Gaps = 9/17 (52%)

Query  314  GLH-------STP--DS  321
            GLH       STP  DS
Sbjct  646  GLHVLAPTFDSTPAIDS  662


 Score = 16.3 bits (31),  Expect = 63022, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  368   EKKATQM  374
             EK AT M
Sbjct  2946  EKNATGM  2952


 Score = 15.9 bits (30),  Expect = 81511, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  226  KRSSR  230
            KR SR
Sbjct  52   KRASR  56


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 7/20 (35%)

Query  273  ARRAQELEMEMLSSTSPPER  292
            ARR Q        S S P R
Sbjct  27   ARRDQ-------ASASKPGR  39


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 5/12 (41%), Positives = 7/12 (58%), Gaps = 0/12 (0%)

Query  59   VSREKALQTTTN  70
            +S +  LQ T N
Sbjct  706  ISQQDPLQVTSN  717


>ref|YP_709456.1|  glpE protein [Borrelia afzelii PKo]
Length=124

 GENE ID: 4227181 glpE | glpE protein [Borrelia afzelii PKo]
(10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   191, Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query  199  YVPFIVT---LLVYIKIYIVLRRRR  220
            YV FIV    L  YI  +IVLR  R
Sbjct  3    YVKFIVLVVFLFFYIWFFIVLRMKR  27


 Score = 17.6 bits (34),  Expect = 23365, Method: Compositional matrix adjust.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 0/15 (0%)

Query  377  IVLGVFIICWLPFFI  391
            IVL VF      FFI
Sbjct  7    IVLVVFLFFYIWFFI  21


>ref|XP_002366710.1|  C2 domain-containing protein [Toxoplasma gondii ME49]
Length=1990

 GENE ID: 7898348 TGME49_040910 | C2 domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   198, Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query  271   EAARRAQELEMEMLSSTSPPER  292
             EA RRA E E ++     PP R
Sbjct  1897  EATRRAKE-EKDLIARQPPPAR  1917


 Score = 20.2 bits (40),  Expect =  3553, Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 29/52 (55%)

Query  139   PMLYNTRYSSKRRVTVMISIVWVLSFTISCPLLFGLNNADQNECIIANPAFV  190
             P+ +NT Y SK               TIS        +A     IIAN  FV
Sbjct  1206  PLHFNT-YDSK---------------TIS--------DA-----IIANVDFV  1228


 Score = 19.7 bits (39),  Expect =  5522, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  433  FRKAF  437
            FRKAF
Sbjct  174  FRKAF  178


 Score = 18.9 bits (37),  Expect =  9323, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  97    VGEWKFSR  104
             V EW F R
Sbjct  1117  VAEWQFDR  1124


 Score = 18.9 bits (37),  Expect = 10603, Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 7/10 (70%), Gaps = 1/10 (10%)

Query  360   RRKLSQQKEK  369
             RR L  QKEK
Sbjct  1269  RRILA-QKEK  1277


 Score = 18.5 bits (36),  Expect = 11730, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 3/9 (33%)

Query  135   AVAMPMLYN  143
             AV   MLYN
Sbjct  1240  AV---MLYN  1245


 Score = 18.5 bits (36),  Expect = 13588, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  10    DDDLERQ  16
             DD L+RQ
Sbjct  1877  DDKLQRQ  1883


 Score = 18.0 bits (35),  Expect = 18400, Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 9/22 (40%)

Query  234  AHLRAPL----KGNCTHPEDMK  251
            A LR PL    KG     ED K
Sbjct  403  ASLRPPLSKRRKG-----EDKK  419


 Score = 17.2 bits (33),  Expect = 26329, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  127   AISIDR  132
             AI I+R
Sbjct  1367  AIAIER  1372


 Score = 17.2 bits (33),  Expect = 29129, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 6/9 (66%), Gaps = 1/9 (11%)

Query  11  DDLERQNWS  19
           +D ER  WS
Sbjct  92  ED-ERKHWS  99


 Score = 16.8 bits (32),  Expect = 38728, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  219  RRKR  222
            RRKR
Sbjct  940  RRKR  943


 Score = 16.8 bits (32),  Expect = 44044, Method: Composition-based stats.
 Identities = 7/19 (36%), Positives = 8/19 (42%), Gaps = 7/19 (36%)

Query  280  EM-------EMLSSTSPPE  291
            EM       E+L   S PE
Sbjct  316  EMQKRDSQRELLPGASRPE  334


 Score = 16.3 bits (31),  Expect = 60748, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  289   PPERTRYSPIP  299
             PP  TR  P P
Sbjct  1712  PPASTRVTPAP  1722


 Score = 15.9 bits (30),  Expect = 64191, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  145   RYSSKRRV  152
             RY  KR V
Sbjct  1411  RYAEKRIV  1418


 Score = 15.9 bits (30),  Expect = 80766, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  143   NTRYSSKRR  151
             NTR    RR
Sbjct  1867  NTRLAATRR  1875


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 6/15 (40%), Gaps = 5/15 (33%)

Query  325  PE-----KNGHAKDH  334
            PE       G A DH
Sbjct  839  PEFAVQIRSGNAMDH  853


>ref|XP_002365032.1|  hypothetical protein TGME49_058080 [Toxoplasma gondii ME49]
Length=1711

 GENE ID: 7894829 TGME49_058080 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   198, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 10/13 (76%), Gaps = 0/13 (0%)

Query  277   QELEMEMLSSTSP  289
             +ELE E+  STSP
Sbjct  1326  EELETELATSTSP  1338


 Score = 18.9 bits (37),  Expect =  8904, Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 10/26 (38%), Gaps = 9/26 (34%)

Query  307  LPD-PSHHGLH--------STPDSPA  323
            LPD    H LH          PDS A
Sbjct  535  LPDSAALHALHEEADRNGSAAPDSAA  560


 Score = 18.5 bits (36),  Expect = 13968, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  271  EAARRAQE  278
            E ARR QE
Sbjct  237  EGARR-QE  243


 Score = 18.0 bits (35),  Expect = 16480, Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 6/19 (31%)

Query  361   RKLSQ-QKEKK-----ATQ  373
             R L Q QKE K     AT+
Sbjct  983   RELAQEQKEEKTPSSPATE  1001


 Score = 17.6 bits (34),  Expect = 20926, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  270  VEAARR  275
            V AARR
Sbjct  815  VAAARR  820


 Score = 17.6 bits (34),  Expect = 23151, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 0/9 (0%)

Query  370   KATQMLAIV  378
             KATQ+ A V
Sbjct  1091  KATQLAAFV  1099


 Score = 17.2 bits (33),  Expect = 29129, Method: Composition-based stats.
 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 4/18 (22%)

Query  265   VNRRRVEAA--RRAQELE  280
             ++R   EA   RR  +LE
Sbjct  1390  IDRKHAEASELRR--QLE  1405


 Score = 17.2 bits (33),  Expect = 34368, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  290   PERTR  294
             PER R
Sbjct  1508  PERAR  1512


 Score = 16.8 bits (32),  Expect = 37330, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  318  TPDSPA  323
            TP SPA
Sbjct  994  TPSSPA  999


 Score = 16.8 bits (32),  Expect = 39810, Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 6/24 (25%)

Query  267   RRRVEAA----R-RAQELEMEMLS  285
             R R EA     R RA E E  +LS
Sbjct  1365  RKRMEAEIEDIRGRAAE-EKRLLS  1387


 Score = 16.8 bits (32),  Expect = 43641, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  11    DDLERQ  16
             +DLE Q
Sbjct  1120  EDLEQQ  1125


 Score = 16.3 bits (31),  Expect = 61875, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  147  SSKRR  151
            SS RR
Sbjct  43   SSRRR  47


 Score = 15.5 bits (29),  Expect = 88538, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  437  FLKILH  442
            FL +LH
Sbjct  588  FLEVLH  593


>ref|XP_002370690.1|  cation-transporting ATPase, putative [Toxoplasma gondii ME49]
Length=3009

 GENE ID: 7893575 TGME49_019260 | cation-transporting ATPase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   200, Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 12/29 (41%)

Query  259   SNGSF-----P--VNRRRVEAA-----RR  275
             S GSF     P   NRRR EA      RR
Sbjct  1305  SGGSFSSRRFPREANRRREEASPDEAERR  1333


 Score = 23.1 bits (47),  Expect =   507, Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 10/25 (40%)

Query  279  LEMEMLSST---------S-PPERT  293
            LE++ML  T         S  PERT
Sbjct  736  LELQMLANTKWLLLDGQGSEHPERT  760


 Score = 20.6 bits (41),  Expect =  2648, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 8/16 (50%), Gaps = 1/16 (6%)

Query  216   LRRRRKRVNTKRSSRA  231
             LR   KR  T R  RA
Sbjct  2101  LRQQQKR-ETRRPPRA  2115


 Score = 18.5 bits (36),  Expect = 12510, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 2/15 (13%)

Query  219   RRK--RVNTKRSSRA  231
             R K  R  TKR  RA
Sbjct  2145  RQKLRRAPTKRGRRA  2159


 Score = 15.9 bits (30),  Expect = 65985, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  271   EAARR  275
             EA RR
Sbjct  2191  EATRR  2195


 Score = 15.9 bits (30),  Expect = 69725, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  273  ARRAQ  277
            ARRA+
Sbjct  646  ARRAH  650


 Score = 15.9 bits (30),  Expect = 76434, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  306   TLPD  309
             TLPD
Sbjct  1437  TLPD  1440


 Score = 15.9 bits (30),  Expect = 77140, Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 12/25 (48%)

Query  277  QELEMEMLSSTSPPERTRYSPIPPS  301
            QEL+++        E    SP P S
Sbjct  58   QELQLQ--------E----SPLPAS  70


 Score = 15.9 bits (30),  Expect = 83023, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  54    LVCMAVSRE  62
             L   AV RE
Sbjct  1071  LTSIAVARE  1079


 Score = 15.5 bits (29),  Expect = 86131, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 1/10 (10%)

Query  267   RRRVEA-ARR  275
             RR VE   RR
Sbjct  2157  RRAVETKERR  2166


 Score = 15.5 bits (29),  Expect = 87728, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 5/14 (35%)

Query  310   PSHHGLHSTPDSPA  323
             PS     ST  SPA
Sbjct  2224  PS-----STAHSPA  2232


 Score = 15.5 bits (29),  Expect = 96170, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  275  RAQELEME  282
            R QE E E
Sbjct  759  RTQETEQE  766


>ref|XP_002369133.1|  GATA zinc finger domain-containing protein [Toxoplasma gondii 
ME49]
Length=2005

 GENE ID: 7896217 TGME49_083840 | GATA zinc finger domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   200, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  217   RRRRKR  222
             RRRRKR
Sbjct  1112  RRRRKR  1117


 Score = 19.7 bits (39),  Expect =  5998, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 6/20 (30%)

Query  14   ERQNWSRPFNGSDGKADRPH  33
            ER    RP NG  G  +R H
Sbjct  764  ER----RPLNGGHG--ERRH  777


 Score = 18.9 bits (37),  Expect =  8505, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  184  IANPAF  189
            I NPAF
Sbjct  711  IENPAF  716


 Score = 18.5 bits (36),  Expect = 12169, Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 9/17 (52%), Gaps = 7/17 (41%)

Query  354  SLKTMSRRKLSQQKEKK  370
            SL    RR LS   EKK
Sbjct  834  SL----RRSLS---EKK  843


 Score = 18.5 bits (36),  Expect = 12978, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  269  RVEAARR  275
            R EA RR
Sbjct  115  RLEAPRR  121


 Score = 17.2 bits (33),  Expect = 31064, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  119   TASIL-NL  125
             TA IL NL
Sbjct  1196  TAAILENL  1203


 Score = 17.2 bits (33),  Expect = 31932, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  174  LNNADQN  180
            L N DQN
Sbjct  175  LPNSDQN  181


 Score = 17.2 bits (33),  Expect = 33128, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  418   NSAVNP  423
             NSAV P
Sbjct  1722  NSAVGP  1727


 Score = 16.8 bits (32),  Expect = 44450, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  233   RAHLR  237
             R HLR
Sbjct  1393  RGHLR  1397


 Score = 16.3 bits (31),  Expect = 49177, Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 2/18 (11%)

Query  13    LERQNWSRP-FNGS-DGK  28
             LER++  R    GS +GK
Sbjct  1051  LEREDLTRRLLSGSVEGK  1068


 Score = 16.3 bits (31),  Expect = 51018, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  123  LNLC  126
            LNLC
Sbjct  502  LNLC  505


 Score = 16.3 bits (31),  Expect = 52444, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  175   NNADQN  180
             NN D+N
Sbjct  1688  NNGDEN  1693


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  360   RRKLS  364
             RR LS
Sbjct  1261  RRNLS  1265


>ref|XP_002368457.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=2566

 GENE ID: 7896483 TGME49_090630 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   200, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  217   RRRRKR  222
             RRRRKR
Sbjct  1004  RRRRKR  1009


 Score = 18.5 bits (36),  Expect = 11000, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  317   STPDSP  322
             S PDSP
Sbjct  1711  SAPDSP  1716


 Score = 18.5 bits (36),  Expect = 11000, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 8/11 (72%), Gaps = 1/11 (9%)

Query  283   MLSST-SPPER  292
             +LS T SPP R
Sbjct  2261  LLSPTASPPSR  2271


 Score = 18.0 bits (35),  Expect = 16940, Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 8/19 (42%)

Query  284  LSSTSPPERTRYSPI--PP  300
            LSS SPP+     P+  PP
Sbjct  104  LSS-SPPQ-----PVLSPP  116


 Score = 16.8 bits (32),  Expect = 37330, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  94    LEVVGE  99
             LEVV E
Sbjct  1810  LEVVEE  1815


 Score = 16.3 bits (31),  Expect = 59097, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  311   SHHGLHS  317
             SHH L S
Sbjct  1592  SHHTLRS  1598


>ref|XP_002368171.1|  hypothetical protein TGME49_033120 [Toxoplasma gondii ME49]
Length=2503

 GENE ID: 7900640 TGME49_033120 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   200, Method: Composition-based stats.
 Identities = 6/6 (100%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  217   RRRRKR  222
             RRRRKR
Sbjct  1832  RRRRKR  1837


 Score = 24.0 bits (49),  Expect =   297, Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 5/17 (29%)

Query  270   VEAARR----AQELEME  282
             VEAARR    AQ  +ME
Sbjct  1166  VEAARRSAIAAQ-RDME  1181


 Score = 21.0 bits (42),  Expect =  2144, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  58   AVSREKA  64
            AV REKA
Sbjct  696  AVAREKA  702


 Score = 19.7 bits (39),  Expect =  5323, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 6/15 (40%)

Query  314   GLHSTPDSPAKPEKN  328
             GLH      AK EKN
Sbjct  1101  GLH------AKREKN  1109


 Score = 18.9 bits (37),  Expect =  8742, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 1/20 (5%)

Query  265  VNRRRVEAARRAQELEME-M  283
            V R   E A RA  LE++ M
Sbjct  697  VAREKAETAMRAKALELQVM  716


 Score = 18.9 bits (37),  Expect =  9323, Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 8/21 (38%)

Query  307  LPDPSHHGLHS---TP-DSPA  323
            LP    HGLH     P  SPA
Sbjct  407  LP----HGLHTGAFAPYGSPA  423


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  215   VLRRR  219
             VL RR
Sbjct  2154  VLQRR  2158


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  262  SFPVNR  267
            SF V R
Sbjct  872  SFSVSR  877


 Score = 15.5 bits (29),  Expect = 91852, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  120   ASILNL  125
             AS LNL
Sbjct  2148  ASALNL  2153


>ref|XP_002366007.1|  mitochondrial 2-oxoglutarate/malate carrier protein, putative 
[Toxoplasma gondii ME49]
Length=323

 GENE ID: 7899215 TGME49_074060 | mitochondrial 2-oxoglutarate/malate carrier
protein, putative [Toxoplasma gondii ME49]

 Score = 24.4 bits (50),  Expect =   200, Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 8/59 (13%)

Query  240  LKGNCTHPED--------MKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPP  290
            L  + T P D        +     I K  G F   R       RA  L M ML S    
Sbjct  157  LQADATLPPDQRRNYTGVLNAISRIVKEEGLFGLWRGSTPTVLRAMALNMGMLASNDQA  215


>ref|XP_002371908.1|  hypothetical protein TGME49_107810 [Toxoplasma gondii ME49]
Length=423

 GENE ID: 7893874 TGME49_107810 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   204, Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 25/95 (26%), Gaps = 6/95 (6%)

Query  183  IIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRAHLRAPLKG  242
              A P  V        + P    L V  K    L    K  NT  S    R   RAP  G
Sbjct  150  TLAHPSAVPTAELTALFPPSSPLLVVGDKESKELAS--KKNNTRASAQEAR-DARAPQPG  206

Query  243  NCTHPEDMKLCTVIMKSNGSF--PVNRRRVEAARR  275
             C              S G      N RR     R
Sbjct  207  -CSPEVSSSPSAAHEVSHGGSANACNSRRGNGTQR  240


 Score = 16.8 bits (32),  Expect = 45274, Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 9/44 (20%)

Query  386  WLPFFITHILNIHCDCNIPPVLYSAFTWL------GYVNSAVNP  423
            W   F    L    +    P      T +      G V+SAV P
Sbjct  2    W-SIFAPEALTSTSEPATKPA--GGATRMSPDSSSGSVDSAVKP  42


>ref|XP_002367971.1|  hypothetical protein TGME49_030600 [Toxoplasma gondii ME49]
Length=288

 GENE ID: 7900607 TGME49_030600 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.4 bits (50),  Expect =   208, Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query  209  YIKIYIVLRRRRKRVNTKRSSRAFRAHLRAPLKG-NCTHPE-DMKLCTVIMKSNGSFPVN  266
            + KI   LR        K    A   H   P       HP  +  L   ++     F  +
Sbjct  154  FLKIREDLRAFKEALTLKEAENAGHPHSASPHHAPKIAHPGTEESLSLAVL-FEEIFMLD  212

Query  267  RRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPS  301
                E  RR   L ++ LSST    R RYS  P S
Sbjct  213  SIHLEEKRRF-ALRLQILSSTAQEFRARYSTGPAS  246


>ref|YP_002641252.1|  outer membrane protein [Borrelia spielmanii A14S]
Length=284

 GENE ID: 7558340 BSPA14S_A0049 | outer membrane protein
[Borrelia spielmanii A14S]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   210, Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 44/171 (25%), Gaps = 13/171 (7%)

Query  179  QNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIV----LRRRRKRVNTKRSS-RAFR  233
             N   I NP +     IV   +  +  L  Y K             KR +  RSS    R
Sbjct  117  KNKRFIENPEYTKL--IVERNIKIVLFLENYFKAKFENVKSHKKIKKRMDANRSSLKSLR  174

Query  234  AHLRAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERT  293
                             K      K N     N    +  R   EL  E+ SS    E  
Sbjct  175  DKTNNSGRSRFSNFKTPKSSQGLKKCNKKRILN--KYDLNRADGELSDELESSPDELE-S  231

Query  294  RYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKNGHAKDHPKIAKIFEIQ  344
                   S  +L   + S   L    DS           +       F+ Q
Sbjct  232  STDELESSPDEL---ESSPDELEESSDSGELESEYNVNEETQSEDEFFDLQ  279


 Score = 15.5 bits (29),  Expect = 98857, Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 14/56 (25%)

Query  327  KNGHAKDHPKIAKIFEIQTMPNGKTRTSLKTM-------SRRKLSQQKEKKATQML  375
            K    K H KI K  +         R SLK +        R   S  K  K  Q L
Sbjct  149  KFENVKSHKKIKKRMDA-------NRSSLKSLRDKTNNSGRSRFSNFKTPKSSQGL  197


>ref|XP_002371233.1|  ubiquitin carboxyl-terminal hydrolase, putative [Toxoplasma gondii 
ME49]
Length=4302

 GENE ID: 7901499 TGME49_010780 | ubiquitin carboxyl-terminal hydrolase,
putative [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   212, Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 9/15 (60%), Gaps = 2/15 (13%)

Query  264  PVNRRRVEAARRAQE  278
            P  RRRV   RR QE
Sbjct  929  PFSRRRVK--RRPQE  941


 Score = 21.0 bits (42),  Expect =  2010, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 0/9 (0%)

Query  315   LHSTPDSPA  323
             L+ TPDS A
Sbjct  2991  LQTTPDSAA  2999


 Score = 20.2 bits (40),  Expect =  4154, Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 7/21 (33%)

Query  260   NGSF-PVNRRRVEAARRAQEL  279
              GSF P      EAA RA +L
Sbjct  1866  HGSFSP------EAACRARDL  1880


 Score = 18.9 bits (37),  Expect = 10220, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  267   RRRVEA  272
             RR VEA
Sbjct  2064  RRQVEA  2069


 Score = 17.2 bits (33),  Expect = 29669, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  218   RRRKR  222
             RRRK 
Sbjct  2735  RRRKK  2739


 Score = 17.2 bits (33),  Expect = 35005, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 3/12 (25%)

Query  223   VNTKRSSRA-FR  233
             VNT   SR  FR
Sbjct  4004  VNT--NSRPKFR  4013


 Score = 16.8 bits (32),  Expect = 40548, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  22    FNGSDG  27
             F GSDG
Sbjct  2875  FYGSDG  2880


 Score = 16.8 bits (32),  Expect = 44044, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  300   PSHHQL  305
             P HH+L
Sbjct  4083  PCHHEL  4088


 Score = 16.3 bits (31),  Expect = 49631, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  148  SKRRV  152
            S RRV
Sbjct  931  SRRRV  935


 Score = 16.3 bits (31),  Expect = 60748, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  132   RYTAV  136
              YTAV
Sbjct  4156  KYTAV  4160


 Score = 15.9 bits (30),  Expect = 65382, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  187   PAFV  190
             PAFV
Sbjct  3142  PAFV  3145


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 3/12 (25%)

Query  310   PSHHGL--HSTP  319
             P HH L  H TP
Sbjct  4083  PCHHELLIH-TP  4093


 Score = 15.9 bits (30),  Expect = 79295, Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 4/15 (26%)

Query  291  ERTRYSPIPPSHHQL  305
            +RT    IP   HQL
Sbjct  390  QRT----IPDAAHQL  400


 Score = 15.5 bits (29),  Expect = 90180, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  313   HGLHSTP  319
             HGL S P
Sbjct  3014  HGLASAP  3020


>ref|XP_002366161.1|  hypothetical protein TGME49_024870 [Toxoplasma gondii ME49]
Length=8474

 GENE ID: 7897392 TGME49_024870 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   214, Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 0/13 (0%)

Query  279   LEMEMLSSTSPPE  291
             LE E L S SPPE
Sbjct  4593  LEEERLASPSPPE  4605


 Score = 21.4 bits (43),  Expect =  1834, Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)

Query  46    AVIVFGN-VLVCMAVS  60
             A+  F N  LVC+A+S
Sbjct  7047  AILPFSNRLLVCLAIS  7062


 Score = 20.2 bits (40),  Expect =  3686, Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 16/34 (47%)

Query  267   RRR-----V----EAARRAQELEMEMLSSTSPPE  291
             RRR     V    EAA R  EL       T P E
Sbjct  1127  RRRSSSWTVHQPAEAAQRV-EL------PTTPSE  1153


 Score = 20.2 bits (40),  Expect =  3895, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  278   ELEMEML  284
             EL+ EML
Sbjct  1366  ELQVEML  1372


 Score = 19.7 bits (39),  Expect =  5038, Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 16/55 (29%), Gaps = 30/55 (54%)

Query  264  PVNRRRVEAARRA---------------------QELEMEMLSSTSPPERTRYSP  297
            P +RR    ARRA                     QE         S  E TRY P
Sbjct  273  PGDRR---GARRATRPSPWLIEWDWWWWQRPHFSQE------RCASSQESTRYRP  318


 Score = 19.3 bits (38),  Expect =  6223, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  78    VADLLVA  84
             VADLL A
Sbjct  7273  VADLLAA  7279


 Score = 19.3 bits (38),  Expect =  6885, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 5/13 (38%)

Query  25    SDGK-----ADRP  32
              DGK     ADRP
Sbjct  4507  TDGKGSPRQADRP  4519


 Score = 18.0 bits (35),  Expect = 15033, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 5/9 (55%), Gaps = 0/9 (0%)

Query  266   NRRRVEAAR  274
              R R E AR
Sbjct  4804  HRQRMEGAR  4812


 Score = 18.0 bits (35),  Expect = 16785, Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 19/40 (47%)

Query  271   EAARRAQELEMEMLSST----SPP----ERTRYSPI--PP  300
             E  RR         SST      P    ER RY  +  PP
Sbjct  1285  ESPRR---------SSTYARGTAPLEESERHRYPHVHRPP  1315


 Score = 18.0 bits (35),  Expect = 17574, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 2/9 (22%)

Query  275   RAQ--ELEM  281
             RAQ  ELE+
Sbjct  5749  RAQLGELEL  5757


 Score = 18.0 bits (35),  Expect = 17736, Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 6/16 (37%)

Query  272   AARRAQE------LEM  281
             A RRAQ+      LE+
Sbjct  3022  AQRRAQQQVTDELLEL  3037


 Score = 18.0 bits (35),  Expect = 18400, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  271   EAARRA  276
             EAA RA
Sbjct  7668  EAAKRA  7673


 Score = 18.0 bits (35),  Expect = 19443, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  120   ASILNL  125
             ASIL L
Sbjct  4411  ASILSL  4416


 Score = 17.6 bits (34),  Expect = 20926, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  271   EAARRAQE  278
             +AARR  E
Sbjct  3130  QAARRSNE  3137


 Score = 17.6 bits (34),  Expect = 22522, Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 8/14 (57%), Gaps = 1/14 (7%)

Query  138   MPMLYNTR-YSSKR  150
             M  LY  R YSS R
Sbjct  2483  MLILYILRGYSSER  2496


 Score = 17.6 bits (34),  Expect = 24463, Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 12/34 (35%)

Query  307   LPDPSHHGLHSTPDSPAKP----EKN-GHAKDHP  335
             LP PS        +S A P    E N GH  +HP
Sbjct  3208  LPAPSR-------ESCAPPSASVEANQGHPQEHP  3234


 Score = 17.2 bits (33),  Expect = 29398, Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 8/24 (33%), Gaps = 10/24 (41%)

Query  341   FEIQTMPNGKTRTSLKTMSRRKLS  364
             FE Q       R     M R  LS
Sbjct  4940  FELQ-----RAR-----MRRQRLS  4953


 Score = 17.2 bits (33),  Expect = 29669, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  267  RRRV  270
            RRRV
Sbjct  948  RRRV  951


 Score = 17.2 bits (33),  Expect = 33742, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  343   IQTMPN  348
             +QTM N
Sbjct  5423  VQTMTN  5428


 Score = 17.2 bits (33),  Expect = 34685, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 7/12 (58%), Gaps = 5/12 (41%)

Query  59    VSREKALQTTTN  70
             +SREK     TN
Sbjct  4188  ISREK-----TN  4194


 Score = 16.8 bits (32),  Expect = 36989, Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 9/26 (34%), Gaps = 12/26 (46%)

Query  347   PNGKTRT----SLKTMSRRKLSQQKE  368
             P G TR      L T        QKE
Sbjct  4757  PHGETRSVFCAGLRT--------QKE  4774


 Score = 16.8 bits (32),  Expect = 37675, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  191   VYSSIV  196
             +Y SIV
Sbjct  7844  IYGSIV  7849


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  291   ERTR  294
             ERTR
Sbjct  6787  ERTR  6790


 Score = 16.8 bits (32),  Expect = 40548, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  136   VAMPML  141
             V M ML
Sbjct  3388  VGMQML  3393


 Score = 16.8 bits (32),  Expect = 44450, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  218   RRRKR  222
             RRR R
Sbjct  6762  RRRQR  6766


 Score = 16.8 bits (32),  Expect = 46969, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  320   DSPAKP  325
             +SP KP
Sbjct  5491  ESPSKP  5496


 Score = 16.3 bits (31),  Expect = 50551, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 1/6 (16%)

Query  217   RR-RRK  221
             RR RRK
Sbjct  5728  RRSRRK  5733


 Score = 16.3 bits (31),  Expect = 51018, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  10    DDDLERQ  16
             ++D ERQ
Sbjct  3974  EEDAERQ  3980


 Score = 16.3 bits (31),  Expect = 52444, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  61    REKALQT  67
             REK L T
Sbjct  6747  REKGLAT  6753


 Score = 15.9 bits (30),  Expect = 63604, Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 10/29 (34%), Gaps = 17/29 (58%)

Query  40    LLTLLI----AVIVFGNVLVCMAVSREKA  64
             LL LLI    AV             RE A
Sbjct  6954  LLELLIDEDGAV-------------RERA  6969


 Score = 15.9 bits (30),  Expect = 68455, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  406   VLYS  409
             VLYS
Sbjct  7501  VLYS  7504


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  304   QLTLPD  309
             QLT PD
Sbjct  6516  QLTSPD  6521


 Score = 15.9 bits (30),  Expect = 73676, Method: Composition-based stats.
 Identities = 4/8 (50%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  354   SLKTMSRR  361
             SL  +SR 
Sbjct  7556  SLRSLSRK  7563


 Score = 15.9 bits (30),  Expect = 76434, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 4/10 (40%)

Query  349   GKTR----TS  354
             GKTR    TS
Sbjct  1204  GKTRSESMTS  1213


 Score = 15.9 bits (30),  Expect = 77852, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 6/11 (54%), Gaps = 0/11 (0%)

Query  63    KALQTTTNYLI  73
             K LQ  T  LI
Sbjct  6666  KCLQSATANLI  6676


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 6/15 (40%), Gaps = 4/15 (26%)

Query  217   RRRRKR----VNTKR  227
             R RR R     N  R
Sbjct  4946  RMRRQRLSALLNSRR  4960


 Score = 15.5 bits (29),  Expect = 89355, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  271   EAARR  275
             EA RR
Sbjct  4618  EAGRR  4622


 Score = 15.5 bits (29),  Expect = 97953, Method: Composition-based stats.
 Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 8/18 (44%)

Query  387   LPFF--------ITHILN  396
             LPF         I H+L+
Sbjct  7049  LPFSNRLLVCLAISHVLD  7066


 Score = 15.5 bits (29),  Expect = 99770, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  323   AKPEKNGHAKD  333
             A PE +GH  D
Sbjct  4391  AEPEADGHEDD  4401


>ref|XP_002371189.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=2132

 GENE ID: 7901453 TGME49_097690 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   216, Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 3/22 (13%)

Query  265   VNR--RRVEAARRAQEL-EMEM  283
             VNR  RR E  RR  EL E E+
Sbjct  1605  VNRERRRAEDFRRLRELREQEL  1626


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 2/12 (16%)

Query  264  PVNRRRVEAARR  275
            PV R  V AA R
Sbjct  526  PVSR--VSAASR  535


 Score = 17.2 bits (33),  Expect = 29669, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  216   LRRRR  220
             L RRR
Sbjct  1140  LKRRR  1144


 Score = 17.2 bits (33),  Expect = 35005, Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 6/21 (28%)

Query  265   VNRRRVEAARRAQELEMEMLS  285
             V RRR    R   +LE   LS
Sbjct  1174  VERRRM---R---QLEQPVLS  1188


 Score = 16.8 bits (32),  Expect = 42454, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  421   VNPI  424
             VNPI
Sbjct  1895  VNPI  1898


 Score = 16.8 bits (32),  Expect = 46969, Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 4/22 (18%)

Query  290   PERTRYSPIPP---S-HHQLTL  307
             P R R  P PP   S +HQ  L
Sbjct  2069  PARLREDPLPPQLRSVQHQHSL  2090


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  277  QELE  280
            QELE
Sbjct  973  QELE  976


 Score = 15.9 bits (30),  Expect = 66594, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  406   VLYS  409
             VLYS
Sbjct  1404  VLYS  1407


 Score = 15.9 bits (30),  Expect = 74356, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  277   QELEM  281
             QEL M
Sbjct  1943  QELKM  1947


 Score = 15.9 bits (30),  Expect = 75042, Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 25/50 (50%)

Query  259  SNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLP  308
            SN  FP       AA  A  L  + LSS   PE             L LP
Sbjct  260  SNSPFPM------AA--APSL--DALSS---PEK------------LSLP  284


>ref|XP_002370124.1|  zinc finger DHHC domain-containing protein [Toxoplasma gondii 
ME49]
Length=1268

 GENE ID: 7899982 TGME49_093220 | zinc finger DHHC domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   220, Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 26/79 (32%), Gaps = 19/79 (24%)

Query  142  YNTRYSSKRRVTVMISIVWVLSFTIS-CPLLFGLNNADQNECIIANPAF--VVYSSIVSF  198
               RY     V VM+    VL    S  P L          CI ANP F  V   S V  
Sbjct  116  HSGRYCA--PVAVMVVRCLVLGLLMSASPQL----------CIFANPSFESVFLWSLVLL  163

Query  199  YV-PFIVTLL---VYIKIY  213
             V  +  T L    Y K  
Sbjct  164  TVAAYLLTALGDPGYLKYC  182


 Score = 17.2 bits (33),  Expect = 28337, Method: Compositional matrix adjust.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 0/14 (0%)

Query  201   PFIVTLLVYIKIYI  214
             PF    LV I IY 
Sbjct  1118  PFNRGVLVNICIYC  1131


 Score = 17.2 bits (33),  Expect = 32524, Method: Compositional matrix adjust.
 Identities = 9/42 (21%), Positives = 11/42 (26%), Gaps = 0/42 (0%)

Query  363  LSQQKEKKATQMLAIVLGVFIICWLPFFITHILNIHCDCNIP  404
            LS Q E    +  A         W+P          C    P
Sbjct  12   LSAQREYHVSEPHARPFSERLATWMPPEPPRTASDACSVSTP  53


 Score = 16.8 bits (32),  Expect = 38373, Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query  234  AHLR---APLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPP  290
            AHLR    P  G          C       G    + RR EA  RA +L        SPP
Sbjct  856  AHLRRLATPAEGGADRGMAQEVCRDSR--EGRQQEDLRRSEASDRAKQL----HGPPSPP  909


 Score = 15.9 bits (30),  Expect = 67829, Method: Compositional matrix adjust.
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  15   RQNWSR  20
            R+NWSR
Sbjct  335  RENWSR  340


 Score = 15.9 bits (30),  Expect = 71018, Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 8/43 (18%)

Query  76    LAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMC  118
             LAVA L +  LV  W    E+     F       F TL  M C
Sbjct  1038  LAVAVLYIRALV--WQSEAEIQNPFYF----VALFLTL--MFC  1072


 Score = 15.9 bits (30),  Expect = 73002, Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 3/23 (13%)

Query  302  HHQLTLPD---PSHHGLHSTPDS  321
            H Q   PD   P   GL S P S
Sbjct  500  HMQIARPDPQSPPDGGLSSSPHS  522


 Score = 15.5 bits (29),  Expect = 90180, Method: Compositional matrix adjust.
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 9/32 (28%)

Query  179   QNECIIANPAFVVYSSIVSFYVPFIVTLLVYI  210
             Q E  I NP F        ++V    TL+   
Sbjct  1051  QSEAEIQNP-F--------YFVALFLTLMFCL  1073


>ref|XP_002371538.1|  hypothetical protein TGME49_020130 [Toxoplasma gondii ME49]
Length=3149

 GENE ID: 7897885 TGME49_020130 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   222, Method: Composition-based stats.
 Identities = 7/9 (77%), Positives = 7/9 (77%), Gaps = 0/9 (0%)

Query  274   RRAQELEME  282
             RR QELE E
Sbjct  1012  RRGQELETE  1020


 Score = 20.6 bits (41),  Expect =  2850, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 7/7 (100%), Gaps = 0/7 (0%)

Query  174   LNNADQN  180
             L+NA+QN
Sbjct  3039  LDNAEQN  3045


 Score = 19.3 bits (38),  Expect =  7410, Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 7/22 (31%)

Query  83    VAT-L-VMPWVVYLEVVGEWKF  102
             VAT L + P V  LEV   W F
Sbjct  2194  VATSLGISPRV--LEV---WRF  2210


 Score = 18.0 bits (35),  Expect = 16179, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 0/13 (0%)

Query  265  VNRRRVEAARRAQ  277
            V R R  A RR Q
Sbjct  13   VARVRMKAERRGQ  25


 Score = 17.6 bits (34),  Expect = 21709, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  212   IYIVL  216
             IY+VL
Sbjct  2932  IYVVL  2936


 Score = 17.6 bits (34),  Expect = 23798, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 7/12 (58%), Gaps = 2/12 (16%)

Query  97    VGEWKFSR-IHC  107
             VGE   S  IHC
Sbjct  2560  VGERR-SKEIHC  2570


 Score = 17.2 bits (33),  Expect = 29398, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  291   ERTRYSPI  298
             E TR  PI
Sbjct  1656  EKTRSAPI  1663


 Score = 16.8 bits (32),  Expect = 39810, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  324  KPEKNGHAKDH  334
            K E  G+AK H
Sbjct  19   KAERRGQAKTH  29


 Score = 15.9 bits (30),  Expect = 83789, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  15   RQNWS  19
            RQ WS
Sbjct  451  RQLWS  455


>ref|XP_002367534.1|  hypothetical protein TGME49_002490 [Toxoplasma gondii ME49]
Length=3123

 GENE ID: 7894379 TGME49_002490 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   222, Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)

Query  215  VLRRRRKRVN-TKR-SSRA  231
            V RRR K V  T R S RA
Sbjct  633  VARRRKKHVARTQRLSARA  651


 Score = 20.2 bits (40),  Expect =  4470, Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 5/21 (23%)

Query  269   RVEAARRA---QELEMEMLSS  286
             RV AAR A   +E E E  SS
Sbjct  1199  RVNAARQARKDEEREAE--SS  1217


 Score = 17.6 bits (34),  Expect = 21314, Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 10/24 (41%)

Query  265  VNRRR---VE-----AAR--RAQE  278
            V RRR   V       AR  R QE
Sbjct  633  VARRRKKHVARTQRLSARAQREQE  656


 Score = 17.2 bits (33),  Expect = 26818, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 2/9 (22%)

Query  265   VNRRR--VE  271
             V RRR  VE
Sbjct  1869  VARRRASVE  1877


 Score = 17.2 bits (33),  Expect = 27065, Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 14/25 (56%)

Query  10   DDDLERQNWSRPFNGSDGKADRPHY  34
            D+DL               AD P+Y
Sbjct  798  DEDL--------------RADHPQY  808


 Score = 17.2 bits (33),  Expect = 32524, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  265   VNRRRVEA  272
             V+R R EA
Sbjct  1458  VDRHRGEA  1465


 Score = 17.2 bits (33),  Expect = 34368, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  84    ATLVMPWV  91
             ATL   WV
Sbjct  2214  ATLARAWV  2221


 Score = 16.3 bits (31),  Expect = 52444, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query  286  STSPPERTRYSPI  298
            STS P R   SP+
Sbjct  48   STSTPARVS-SPV  59


 Score = 16.3 bits (31),  Expect = 53909, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  190   VVYSSI  195
             VV+SS+
Sbjct  1577  VVFSSV  1582


 Score = 16.3 bits (31),  Expect = 54909, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 6/12 (50%), Gaps = 4/12 (33%)

Query  10    DDDLERQNWSRP  21
             DD  ER    RP
Sbjct  3038  DDQVER----RP  3045


 Score = 16.3 bits (31),  Expect = 56964, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  228   SSRAFRAHLR  237
             S  A RA LR
Sbjct  998   SPQALRAFLR  1007


 Score = 16.3 bits (31),  Expect = 57490, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  316   HSTPDSPA  323
             H T D PA
Sbjct  1176  HRTQDPPA  1183


 Score = 15.9 bits (30),  Expect = 69725, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  226   KRSSRAF  232
             KRS R F
Sbjct  1962  KRSRRLF  1968


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  275   RAQELEME  282
             RAQ+ E E
Sbjct  2862  RAQD-EVE  2868


>ref|XP_002368310.1|  chromosome segregation protein smc1, putative [Toxoplasma gondii 
ME49]
Length=1638

 GENE ID: 7898084 TGME49_088700 | chromosome segregation protein smc1, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   224, Method: Composition-based stats.
 Identities = 8/12 (66%), Positives = 8/12 (66%), Gaps = 3/12 (25%)

Query  215   VL---RRRRKRV  223
             VL   RRRR RV
Sbjct  1072  VLAEHRRRRQRV  1083


 Score = 21.8 bits (44),  Expect =  1213, Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 2/17 (11%)

Query  267  RRRVEA-ARRAQELEME  282
            RRR EA   R  EL ME
Sbjct  167  RRRAEAQGPRLMEL-ME  182


 Score = 21.4 bits (43),  Expect =  1657, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  316  HSTPDSPA  323
            HS  DSPA
Sbjct  87   HSSSDSPA  94


 Score = 18.9 bits (37),  Expect =  8662, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 5/17 (29%)

Query  72    LIVSL-----AVADLLV  83
             L +SL       ADLLV
Sbjct  1561  LFISLKDKMFSTADLLV  1577


 Score = 18.9 bits (37),  Expect =  9409, Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 9/26 (34%)

Query  267   RR-RVEAAR------RAQE--LEMEM  283
             RR RVEA         AQE  L+ E+
Sbjct  1079  RRQRVEALKAELTGLHAQETQLQAEL  1104


 Score = 18.5 bits (36),  Expect = 12058, Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 23/48 (47%)

Query  72   LIV-SLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDI----FVTLD  114
            LIV SLAVA                   E  F R H  +     VTLD
Sbjct  895  LIVPSLAVA------------------RELRFGRAHASVEKYRLVTLD  924


 Score = 17.2 bits (33),  Expect = 34053, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  58   AVSREKA  64
            A  REKA
Sbjct  576  AAAREKA  582


 Score = 16.3 bits (31),  Expect = 58021, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  434   RKAFL  438
             R AFL
Sbjct  1244  RRAFL  1248


 Score = 15.9 bits (30),  Expect = 77140, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  57   MAVSRE  62
            +AV RE
Sbjct  900  LAVARE  905


 Score = 15.5 bits (29),  Expect = 88538, Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 2/15 (13%)

Query  265   VNRRRVEAA--RRAQ  277
             V RR V A   RR Q
Sbjct  1067  VGRRHVLAEHRRRRQ  1081


 Score = 15.5 bits (29),  Expect = 91012, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  366   QKEKK  370
             +KEKK
Sbjct  1381  EKEKK  1385


>ref|XP_002367190.1|  hypothetical protein TGME49_048430 [Toxoplasma gondii ME49]
Length=315

 GENE ID: 7897995 TGME49_048430 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.4 bits (50),  Expect =   226, Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 14/79 (17%)

Query  235  HLRAPLKGNCTHPEDMK-----LCTVIMKSNGSFPVN---RRRV---EAARRAQELEMEM  283
            HLR   KG  T+    K     L     K   S       RR V   +  R    L+  M
Sbjct  176  HLRGASKGSATQDKGDKSFASRLRMLFIKGADSLCCSCRRRRKVHVWQDTRSSARLDVAM  235

Query  284  L---SSTSPPERTRYSPIP  299
                 S    ER R+    
Sbjct  236  ARWDCSDGGSERERFGALQ  254


>ref|NP_040127.1|  multifunctional expression regulator [Human herpesvirus 3]
Length=452

 GENE ID: 1487672 ORF4 | RNA-binding protein; shuttles between nucleus and
cytoplasm; inhibits pre-mRNA splicing; exports virus mRNA from nucleus; exerts
most effects post-transcriptionally [Human herpesvirus 3]
(10 or fewer PubMed links)


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   226, Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 6/70 (8%)

Query  292  RTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKNGHAKDHPKIAKIFEIQTMPNGKT  351
            R  Y    P      LPD  HHG        A  E       H      +  Q       
Sbjct  80   RESYHHNRPKTLVVVLPDSNHHGGRDVETGYARIERG-----HRRSSRSYNTQSSRKHRD  134

Query  352  RTSLKTMSRR  361
            R SL    RR
Sbjct  135  R-SLSNRRRR  143


 Score = 17.2 bits (33),  Expect = 30780, Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 7/19 (36%), Gaps = 0/19 (0%)

Query  133  YTAVAMPMLYNTRYSSKRR  151
            Y        YN RYS  R 
Sbjct  59   YVERTADTAYNPRYSKRRH  77


>ref|XP_002367692.1|  protein kinase, putative [Toxoplasma gondii ME49]
Length=2445

 GENE ID: 7897442 TGME49_004100 | protein kinase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   228, Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 9/18 (50%)

Query  268   RRVEAA---------RRA  276
             RRVEAA         RRA
Sbjct  1120  RRVEAALKNKGALRTRRA  1137


 Score = 22.3 bits (45),  Expect =   855, Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 10/19 (52%), Gaps = 3/19 (15%)

Query  259  SNGSFPVNRRR--VEAARR  275
            S   FP  R R  VE ARR
Sbjct  19   SSEAFP-TRMRTSVEVARR  36


 Score = 19.3 bits (38),  Expect =  6822, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  267  RRRVEAAR  274
            RR +E AR
Sbjct  879  RRWIEGAR  886


 Score = 18.5 bits (36),  Expect = 12058, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  393   HILNIH  398
             H LNIH
Sbjct  2378  HELNIH  2383


 Score = 18.0 bits (35),  Expect = 16785, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 2/10 (20%)

Query  216  LRRRR--KRV  223
            LRRR    RV
Sbjct  269  LRRRQTANRV  278


 Score = 18.0 bits (35),  Expect = 17574, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  19    SRPFNGSDGKA  29
             SR F G D KA
Sbjct  1984  SREFGGVDAKA  1994


 Score = 18.0 bits (35),  Expect = 19443, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 9/13 (69%), Gaps = 1/13 (7%)

Query  53    VLVCMAVSREKAL  65
             VL C+  SRE AL
Sbjct  1671  VL-CLDRSREDAL  1682


 Score = 17.6 bits (34),  Expect = 19986, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  416  YVNSAVNPII  425
            YV S V P I
Sbjct  680  YVPSEVAPLI  689


 Score = 16.8 bits (32),  Expect = 39810, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  79    ADLLVATL  86
             ADLL A L
Sbjct  1533  ADLLPAIL  1540


 Score = 15.5 bits (29),  Expect = 99770, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  326  EKNG  329
            EKNG
Sbjct  747  EKNG  750


>ref|XP_002369783.1|  DEAH-box RNA/DNA helicase, putative [Toxoplasma gondii ME49]
Length=2234

 GENE ID: 7901203 TGME49_118440 | DEAH-box RNA/DNA helicase, putative
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   232, Method: Composition-based stats.
 Identities = 8/9 (88%), Positives = 8/9 (88%), Gaps = 1/9 (11%)

Query  273  ARR-AQELE  280
            ARR AQELE
Sbjct  360  ARRVAQELE  368


 Score = 20.6 bits (41),  Expect =  2648, Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 3/20 (15%)

Query  267   RRRV--EAA-RRAQELEMEM  283
             R R   +AA RR   LEM M
Sbjct  1028  RSRLARQAAVRRNRRLEMNM  1047


 Score = 19.3 bits (38),  Expect =  7275, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  271   EAARRAQE  278
             EAARR  E
Sbjct  1870  EAARREAE  1877


 Score = 16.8 bits (32),  Expect = 38022, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  80   DLLVAT  85
            DLL AT
Sbjct  490  DLLAAT  495


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 3/3 (100%), Positives = 3/3 (100%), Gaps = 0/3 (0%)

Query  116   MMC  118
             MMC
Sbjct  1074  MMC  1076


 Score = 16.8 bits (32),  Expect = 42066, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  344   QTMPN  348
             QTM N
Sbjct  2217  QTMQN  2221


 Score = 16.3 bits (31),  Expect = 62446, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  58   AVSRE  62
            A+SRE
Sbjct  720  AISRE  724


 Score = 15.9 bits (30),  Expect = 69725, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  31    RPHYNYYA  38
             RP +N YA
Sbjct  1914  RPEFNSYA  1921


 Score = 15.5 bits (29),  Expect = 90180, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  264  PVNRR  268
            PV RR
Sbjct  59   PVGRR  63


>ref|XP_002366877.1|  hypothetical protein TGME49_043780 [Toxoplasma gondii ME49]
Length=466

 GENE ID: 7894967 TGME49_043780 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.4 bits (50),  Expect =   234, Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 38/123 (30%), Gaps = 20/123 (16%)

Query  180  NECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAF-------  232
             ECI    A   +S  V  +   +   L   K          R  T R            
Sbjct  287  EECILE--ALTAFSGHVDAFLHLVSNPLDEQKNGNAA----ERETTARCEDGVFAEEAKE  340

Query  233  RAHLRAPLKGNCTHPEDMKLCTVIMKSNGS--FPVNRRRVEAA----RRAQELEMEMLSS  286
            R            H E MK         G   + VNRR V+A     R A E ++++L  
Sbjct  341  REAFHGASSSSPAHGE-MKEQSPKKPRTGAGLYGVNRREVQAVLSDLRQAAEWQLDLLHG  399

Query  287  TSP  289
             SP
Sbjct  400  PSP  402


>ref|XP_002365620.1|  hypothetical protein TGME49_069290 [Toxoplasma gondii ME49]
Length=4513

 GENE ID: 7894542 TGME49_069290 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.4 bits (50),  Expect =   236, Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 8/31 (25%)

Query  36   YYATLLTLLIAVIVFGNVL-VCMAVSREKAL  65
            YY TLL        F  VL   MA  RE AL
Sbjct  426  YYGTLLS------PFPSVLSLAMAAARE-AL  449


 Score = 18.9 bits (37),  Expect =  8123, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  433  FRKAFLKIL  441
            F  AF KIL
Sbjct  216  FQDAFVKIL  224


 Score = 18.9 bits (37),  Expect =  9761, Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 30/55 (54%)

Query  49   VFGNV-LVC--MAVS---REKALQTTTNYLIVSLA----VADLL------VATLV  87
            V+G+V  VC   AVS   R              LA    V +LL      V TLV
Sbjct  351  VYGDVDNVCNPVAVSVFTR--------------LARHGFVENLLDRIGTLVSTLV  391


 Score = 18.5 bits (36),  Expect = 11000, Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 5/20 (25%)

Query  401  CNIPPVLYSAFTWL---GYV  417
            CN  PV  S FT L   G+V
Sbjct  359  CN--PVAVSVFTRLARHGFV  376


 Score = 18.5 bits (36),  Expect = 12510, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  15    RQNWSR  20
             RQ W R
Sbjct  4464  RQGWTR  4469


 Score = 18.5 bits (36),  Expect = 14227, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  61    REKAL  65
             REKAL
Sbjct  1046  REKAL  1050


 Score = 18.0 bits (35),  Expect = 19089, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  217   RRRRK  221
             RRRR 
Sbjct  2574  RRRRR  2578


 Score = 16.8 bits (32),  Expect = 36989, Method: Composition-based stats.
 Identities = 6/14 (42%), Positives = 6/14 (42%), Gaps = 5/14 (35%)

Query  3     PLNLSWYDDDLERQ  16
             PL  SW      RQ
Sbjct  1876  PLSFSW-----NRQ  1884


 Score = 16.8 bits (32),  Expect = 41300, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 1/11 (9%)

Query  131  DR-YTAVAMPM  140
            +R YT V  PM
Sbjct  103  ERLYTEVISPM  113


 Score = 16.8 bits (32),  Expect = 41300, Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 7/22 (31%)

Query  265  VNRRRVEAARRAQELEMEMLSS  286
            V R R E  R      +E LSS
Sbjct  521  VERSRTE-GR------LEKLSS  535


 Score = 16.8 bits (32),  Expect = 41300, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 2/12 (16%)

Query  163   SFTISCPLLFGL  174
             S T+S  LLF L
Sbjct  3900  SSTVS--LLFSL  3909


 Score = 16.8 bits (32),  Expect = 44044, Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 9/21 (42%)

Query  272  AARRAQELEMEML--SSTSPP  290
            AAR       E L   S SPP
Sbjct  444  AAR-------EALGGTSASPP  457


 Score = 16.3 bits (31),  Expect = 60193, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  244   CTHPEDM  250
             CT  E+M
Sbjct  3921  CTSAEEM  3927


 Score = 15.9 bits (30),  Expect = 67829, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  411  FTWLGY  416
            F WLG+
Sbjct  813  FLWLGF  818


>ref|ZP_03088197.1|  lipoprotein [Borrelia burgdorferi 80a]
Length=142

 Score = 24.0 bits (49),  Expect =   239, Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 10/34 (29%)

Query  346  MPNG----KTRTSLKTMSRRK--LSQQKEKKATQ  373
            M NG     T TS  T SR K  L  QKE  ATQ
Sbjct  14   MLNGCNSNDTNTS-QTKSRQKRDLT-QKE--ATQ  43


>ref|YP_002641959.1|  hypothetical protein BSPA14S_N0019 [Borrelia spielmanii A14S]
Length=260

 GENE ID: 7559687 BSPA14S_N0019 | hypothetical protein
[Borrelia spielmanii A14S]

 Score = 24.0 bits (49),  Expect =   241, Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query  3    PLNLSWYDDDLERQNWSRPFNGSDGKADRPHYNYYATLLTLLIAVIVFGNVLVCMAVSRE  62
              NL  +DDD E             K +  H NYY   L   I    +  +L+      E
Sbjct  13   SFNLFAFDDDVEK---------YIKKIEEIHTNYYSVELG--IDFLNYAKILISSLSKIE  61

Query  63   KALQTTTNYLIVSLAVADL-LVATLVMPWVVYL-EVVGEWK  101
                   NY   SL    L L   LV   + YL + V E K
Sbjct  62   NNIL--SNYERSSLKFNYLNLLISLVFCDIAYLIDDVNEYK  100


>ref|ZP_03623752.1|  di-trans,poly-cis-decaprenylcistransferase [Borrelia burgdorferi 
64b]
Length=230

 Score = 24.0 bits (49),  Expect =   245, Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 47/136 (34%), Gaps = 22/136 (16%)

Query  31   RPHYNYYATLLTLLIAVIVFGNV--LVCMAVSREK---ALQTTTNYLIVSLAVA-----D  80
            R  +++Y       I +IV G+V  L     S  K         N LI  LA+      +
Sbjct  83   RAEFDFYEKNG---IKIIVSGDVESLSGEVKSSIKDSISFSKNFNNLILNLAINYGGRNE  139

Query  81   LLVA-TLVMPWVVYLEVVGEWKFSRIHCD-IFVTLDVMMCTAS-------ILNLCAISID  131
             L A   +      LE   E  FS    +     LD +  T          L   A S  
Sbjct  140  ILRAVKKIVSSDFDLESLNENIFSSFLDNPELPDLDLLIRTGGNIRISNFFLWRIAYSEL  199

Query  132  RYTAVAMPMLYNTRYS  147
             +  V  P  Y+TRYS
Sbjct  200  IFSNVLWPEYYDTRYS  215


>ref|YP_002776108.1|  xanthine/uracil permease family protein [Borrelia burgdorferi 
Bol26]
Length=451

 GENE ID: 7709030 BBUBOL26_B19 | xanthine/uracil permease family protein
[Borrelia burgdorferi Bol26]

 Score = 24.0 bits (49),  Expect =   245, Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 36/130 (27%), Gaps = 29/130 (22%)

Query  289  PPERTRYSPIPPSHHQL----TLPDPS-----------HHGLHSTPDS----PAKPEKNG  329
            P    R+  I P   QL     L +                L  T        AK     
Sbjct  228  PDGILRFESIKPIFNQLDFSYILSEHFWSFITIVLILLFNDLFDTLGTLIAVAAKGNMLD  287

Query  330  HAKDHPKIAKIFEIQTMPNGKTRTSLKTMSRRKLSQQ-----KEKKATQMLAIVLGV--F  382
                 P + KIF I       T      MS      +      E   T +  IV G+  F
Sbjct  288  KNGKIPNVGKIFLIDAIS--TTIGAIMGMSTVTAYIESCTGIEEGGKTGLTVIVTGIMFF  345

Query  383  IICWL-PFFI  391
            I   L P FI
Sbjct  346  IAIFLSPLFI  355


>ref|XP_002371972.1|  hypothetical protein TGME49_079320 [Toxoplasma gondii ME49]
Length=4967

 GENE ID: 7895887 TGME49_079320 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   247, Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 5/22 (22%)

Query  259   SNGSFPVNR---RRVEAARRAQ  277
             S+ SF   R   R  EAARR Q
Sbjct  3979  SDESF--HRAVPRPPEAARRTQ  3998


 Score = 19.7 bits (39),  Expect =  4681, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 2/11 (18%)

Query  10   DDDLERQNWSR  20
            DDD  R+ W R
Sbjct  991  DDD--REGWGR  999


 Score = 19.7 bits (39),  Expect =  4811, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)

Query  114   DVMMCTASILNLCAISIDRY  133
             D +M  A I +   IS DRY
Sbjct  2538  DLLMGVAAIFD--EISDDRY  2555


 Score = 19.3 bits (38),  Expect =  6110, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 6/6 (100%), Gaps = 0/6 (0%)

Query  404   PPVLYS  409
             PPVL+S
Sbjct  2880  PPVLFS  2885


 Score = 19.3 bits (38),  Expect =  6166, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 8/11 (72%), Gaps = 0/11 (0%)

Query  297   PIPPSHHQLTL  307
             P+ PS HQ TL
Sbjct  1435  PVEPSLHQATL  1445


 Score = 18.5 bits (36),  Expect = 14358, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 3/13 (23%)

Query  284   LSSTSPPE---RT  293
             LS  SP E   RT
Sbjct  4089  LSPASPSEALQRT  4101


 Score = 18.0 bits (35),  Expect = 14624, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  157   SIVW  160
             SIVW
Sbjct  2075  SIVW  2078


 Score = 17.6 bits (34),  Expect = 22940, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 1/8 (12%)

Query  409   SAFTWLGY  416
             SA TWL Y
Sbjct  2372  SA-TWLVY  2378


 Score = 17.2 bits (33),  Expect = 29398, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  274  RRAQE  278
            RRAQ+
Sbjct  268  RRAQQ  272


 Score = 17.2 bits (33),  Expect = 32825, Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 11/33 (33%)

Query  262  SFPVNR-----RRVEAARRAQELEMEMLSSTSP  289
            SFP  R     RR E A R Q    E L S SP
Sbjct  411  SFP--REQRRDRR-EGASR-QS--GESLPSVSP  437


 Score = 16.8 bits (32),  Expect = 39446, Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 6/12 (50%), Gaps = 4/12 (33%)

Query  219   RRKRVNTKRSSR  230
             RR    T RS R
Sbjct  3995  RR----TQRSAR  4002


 Score = 16.3 bits (31),  Expect = 47840, Method: Composition-based stats.
 Identities = 5/10 (50%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  278   ELEMEMLSST  287
             +L+ + LSST
Sbjct  2810  DLDGDVLSST  2819


 Score = 15.9 bits (30),  Expect = 68455, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  236   LRAPL  240
             +RAPL
Sbjct  2970  MRAPL  2974


 Score = 15.9 bits (30),  Expect = 71673, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  21    PFNGS  25
             PF GS
Sbjct  4622  PFSGS  4626


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  13    LERQNWSR  20
             LER N SR
Sbjct  3759  LERANKSR  3766


 Score = 15.9 bits (30),  Expect = 74356, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  273   ARRAQE  278
             AR A+E
Sbjct  2500  ARKAEE  2505


 Score = 15.9 bits (30),  Expect = 82264, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  286   STSPP  290
             S SPP
Sbjct  1289  SSSPP  1293


 Score = 15.9 bits (30),  Expect = 83023, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  306  TLPDPS  311
            TL +PS
Sbjct  376  TLAEPS  381


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 6/11 (54%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  297   PIPPSHHQLTL  307
             P+ PS  QL L
Sbjct  3228  PVSPSAPQLPL  3238


>ref|YP_003579831.1|  hypothetical protein BAPKO_6003 [Borrelia afzelii PKo]
Length=167

 GENE ID: 9006618 BAPKO_6003 | hypothetical protein [Borrelia afzelii PKo]
(10 or fewer PubMed links)

 Score = 24.0 bits (49),  Expect =   247, Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query  3    PLNLSWYDDDLERQNWSRPFNGSDGKADRPHYNYYATLLTLLIAVIVFGNVLVCMAVSRE  62
              NL  +DDD E             K +  H NYY   L   I    +  +L+      E
Sbjct  13   SFNLFAFDDDVEK---------YIEKIEEIHTNYYSVELG--IDFLNYAKILISSLSKIE  61

Query  63   KALQTTTNYLIVSLAVADL-LVATLVMPWVVYL-EVVGEWK  101
                   NY   SL    L L   LV   + YL + V E K
Sbjct  62   NNIL--SNYERSSLKFNYLNLLISLVFCDIAYLIDDVNEYK  100


>ref|XP_002365940.1|  hypothetical protein TGME49_073380 [Toxoplasma gondii ME49]
Length=2972

 GENE ID: 7897009 TGME49_073380 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   250, Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 9/39 (23%)

Query  285  SSTSPP---ERTRYSPIPPSHHQLTLPDPSHHGLHSTPD  320
            SSTS     ER RYS    S    T  D S   LHS PD
Sbjct  339  SSTSDADLVERSRYS---RS--RATGSDTSNR-LHSAPD  371


 Score = 18.5 bits (36),  Expect = 13713, Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 9/22 (40%)

Query  282   EMLSSTS-PPERTR-----YSP  297
             E LSS S PP   R     YSP
Sbjct  2260  EFLSSLSFPP---RCFSPVYSP  2278


 Score = 17.6 bits (34),  Expect = 24689, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  319   PDSPAKPE  326
             P SP KPE
Sbjct  1778  PASPYKPE  1785


 Score = 17.2 bits (33),  Expect = 28863, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  285  SSTSPPER  292
            S  S PER
Sbjct  385  STVSAPER  392


 Score = 16.8 bits (32),  Expect = 36650, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  11    DDLERQ  16
             DD +RQ
Sbjct  2021  DDFDRQ  2026


 Score = 16.8 bits (32),  Expect = 40177, Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 5/21 (23%)

Query  290   PE-RTRYSPIP-PSHHQLTLP  308
             PE   R  P+P P H    LP
Sbjct  2288  PESWARCGPVPEPAHR---LP  2305


 Score = 16.8 bits (32),  Expect = 42454, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 2/8 (25%)

Query  320   DSP--AKP  325
             DSP  AKP
Sbjct  2420  DSPVAAKP  2427


 Score = 16.3 bits (31),  Expect = 56964, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  216  LRRRR  220
            LR RR
Sbjct  858  LRHRR  862


 Score = 15.9 bits (30),  Expect = 84562, Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 11/22 (50%)

Query  78   VADL-------LVAT----LVM  88
            +ADL       LV      LVM
Sbjct  205  IADLGRYRWLSLVVAIPIELVM  226


>ref|XP_002365779.1|  hypothetical protein TGME49_071130 [Toxoplasma gondii ME49]
Length=2948

 GENE ID: 7897355 TGME49_071130 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   250, Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 13/28 (46%)

Query  268   RRVEAAR-RAQELEMEMLSSTSPPERTR  294
             RR EA R RA+E           PER R
Sbjct  2278  RR-EAMRERAHE-----------PERNR  2293


 Score = 20.6 bits (41),  Expect =  2552, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  216  LRRRR  220
            LRRRR
Sbjct  897  LRRRR  901


 Score = 19.7 bits (39),  Expect =  4901, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  93   YLEVVGEW  100
            YL V GEW
Sbjct  746  YLVVGGEW  753


 Score = 18.0 bits (35),  Expect = 17254, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  68   TTNYLIV  74
            T NYL+V
Sbjct  743  TENYLVV  749


 Score = 18.0 bits (35),  Expect = 18914, Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 5/20 (25%)

Query  217   RRRRK--R-VNT--KRSSRA  231
             RR R   R V+    R SRA
Sbjct  1541  RRSRRLQRTVDSAISRASRA  1560


 Score = 17.6 bits (34),  Expect = 21511, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  271   EAARRAQE  278
             +A RRA E
Sbjct  2254  QAGRRADE  2261


 Score = 17.2 bits (33),  Expect = 33433, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 2/13 (15%)

Query  227   RSSR--AFRAHLR  237
             R SR  A RA LR
Sbjct  2725  RMSRGTARRARLR  2737


 Score = 16.8 bits (32),  Expect = 43641, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  267   RRRVEAA  273
             RRR E A
Sbjct  1613  RRRGEEA  1619


 Score = 16.3 bits (31),  Expect = 54407, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 3/13 (23%)

Query  218   RRRKRVNTKRSSR  230
             RRR     K SSR
Sbjct  2498  RRR---ESKGSSR  2507


 Score = 16.3 bits (31),  Expect = 62446, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  308   PDPS  311
             PDPS
Sbjct  1878  PDPS  1881


 Score = 15.9 bits (30),  Expect = 78570, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  64    ALQTTTNY  71
             ALQ  T Y
Sbjct  1036  ALQESTGY  1043


 Score = 15.5 bits (29),  Expect = 87728, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  273   ARRA  276
             ARRA
Sbjct  2731  ARRA  2734


>ref|YP_853890.1|  hypothetical protein BAPKO_2053 [Borrelia afzelii PKo]
 ref|YP_002455462.1|  hypothetical protein BafACA1_A58 [Borrelia afzelii ACA-1]
Length=312

 GENE ID: 4491036 BAPKO_2053 | hypothetical protein [Borrelia afzelii PKo]
(10 or fewer PubMed links)

 Score = 24.0 bits (49),  Expect =   252, Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 0/42 (0%)

Query  383  IICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPI  424
            I C      T + N    CN P  L      LGYV+S +  I
Sbjct  159  IFCMNELEKTKVINESFACNSPKGLIEHLIRLGYVDSVIVEI  200


>ref|YP_002776186.1|  hypothetical protein BBUBOL26_N02 [Borrelia burgdorferi Bol26]
Length=219

 GENE ID: 7709129 BBUBOL26_N02 | hypothetical protein
[Borrelia burgdorferi Bol26]

 Score = 24.0 bits (49),  Expect =   254, Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 6/26 (23%)

Query  15   RQNWSRPFN------GSDGKADRPHY  34
             +   R FN      G  GK DR  Y
Sbjct  116  KESLTRSFNEQAKGLGNGGKGDRSNY  141


>ref|XP_002371256.1|  hypothetical protein TGME49_011210 [Toxoplasma gondii ME49]
Length=1998

 GENE ID: 7900975 TGME49_011210 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   254, Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 11/44 (25%)

Query  264  PVNRRRVEAARRAQELE--MEMLSSTSPPERTRYSPIPPSHHQL  305
            PV R    A RRA  LE   E   ST  P R R  P+P   +QL
Sbjct  495  PVKR----AERRAP-LEPKKE---STGTPPR-RAPPVPSFLQQL  529


 Score = 21.0 bits (42),  Expect =  2010, Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 9/19 (47%), Gaps = 7/19 (36%)

Query  222   RVNTKRS-SRAFRAHLRAP  239
             RV   RS S      LRAP
Sbjct  1345  RVSSRRSVS------LRAP  1357


 Score = 19.3 bits (38),  Expect =  6338, Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)

Query  193   SSIVSFYVPF-IVTLLV  208
             SS+V F+  F I   LV
Sbjct  1258  SSVVTFFSSFSILSALV  1274


 Score = 17.2 bits (33),  Expect = 26329, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  271  EAARRAQE  278
            +A RR QE
Sbjct  361  QAVRRMQE  368


 Score = 17.2 bits (33),  Expect = 34053, Method: Composition-based stats.
 Identities = 5/10 (50%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  271  EAARRAQELE  280
            +AARR  +L+
Sbjct  896  QAARRPVDLQ  905


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 4/7 (57%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  36   YYATLLT  42
            +Y TLL 
Sbjct  882  FYSTLLS  888


 Score = 16.3 bits (31),  Expect = 54407, Method: Composition-based stats.
 Identities = 5/9 (55%), Positives = 6/9 (66%), Gaps = 0/9 (0%)

Query  56    CMAVSREKA  64
             C AV R+ A
Sbjct  1956  CRAVARDDA  1964


 Score = 15.5 bits (29),  Expect = 93555, Method: Composition-based stats.
 Identities = 6/13 (46%), Positives = 7/13 (53%), Gaps = 5/13 (38%)

Query  225  TKRSSRAFRAHLR  237
            TKR      A+LR
Sbjct  203  TKR-----QAQLR  210


>ref|ZP_03773287.1|  putative fibronectin/fibrinogen-binding protein [Borrelia sp. 
SV1]
Length=473

 Score = 24.0 bits (49),  Expect =   254, Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query  90   WVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSK  149
            W    +  G   F   + +    LDV++      NLC              LY T     
Sbjct  380  WLHTRDYPGAYVFIKNQKNKTPSLDVLLSAG---NLCVFYTKLAKKSGKADLYYTQVKNL  436

Query  150  RRVT  153
            RRV 
Sbjct  437  RRVK  440


>ref|XP_002365344.1|  myb-like DNA-binding domain-containing protein / Zinc finger, 
ZZ type domain-containing protein [Toxoplasma gondii ME49]
Length=2697

 GENE ID: 7899603 TGME49_062420 | myb-like DNA-binding domain-containing protein
/ Zinc finger, ZZ type domain-containing protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   257, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  216   LRRRRKRVNT  225
             LR  RKR+ T
Sbjct  1265  LRKKRKRIST  1274


 Score = 20.6 bits (41),  Expect =  3124, Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 21/49 (42%)

Query  271   EAAR--RAQELEMEMLSSTSPPERTRYSPIPPS----HHQLTLPD--PS  311
             EAAR   A+        S SPP     S  P S    H Q TLP   PS
Sbjct  1457  EAARGQTAH--------SASPPV----SSLPQSFMHLHRQ-TLPGTHPS  1492


 Score = 20.2 bits (40),  Expect =  3754, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  404   PPVLY  408
             PPVLY
Sbjct  1239  PPVLY  1243


 Score = 20.2 bits (40),  Expect =  3859, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 3/11 (27%)

Query  315   LHSTPD---SP  322
             LH TPD   SP
Sbjct  1428  LHGTPDAFASP  1438


 Score = 20.2 bits (40),  Expect =  4270, Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 10/21 (47%)

Query  265  VNRRRVEAARRAQELEMEMLS  285
            V RR VEA          MLS
Sbjct  119  VTRRGVEA----------MLS  129


 Score = 18.9 bits (37),  Expect = 10506, Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 7/14 (50%), Gaps = 5/14 (35%)

Query  6     LSWYDDD-----LE  14
             L W DDD     LE
Sbjct  2480  LAWSDDDEGANSLE  2493


 Score = 18.5 bits (36),  Expect = 11623, Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 9/28 (32%)

Query  264  PVNRRR-VEAARRAQELEMEMLSSTSPP  290
            P  R R VEA  R        LS  SPP
Sbjct  216  PAPRSREVEA--RG------TLSPASPP  235


 Score = 17.6 bits (34),  Expect = 25613, Method: Composition-based stats.
 Identities = 4/10 (40%), Positives = 7/10 (70%), Gaps = 0/10 (0%)

Query  295  YSPIPPSHHQ  304
            Y P+PP  ++
Sbjct  673  YRPVPPNRQE  682


 Score = 17.6 bits (34),  Expect = 26088, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  333  DHPKIA  338
            D PKIA
Sbjct  979  DDPKIA  984


 Score = 17.2 bits (33),  Expect = 26572, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  23    NGSDGKA  29
             NG DG A
Sbjct  2361  NGGDGRA  2367


 Score = 17.2 bits (33),  Expect = 32227, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  304   QLTLPDP  310
             QL LP P
Sbjct  1694  QLNLPSP  1700


 Score = 15.9 bits (30),  Expect = 64784, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  288  SPPE  291
            SPPE
Sbjct  758  SPPE  761


 Score = 15.9 bits (30),  Expect = 71018, Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 7/15 (46%), Gaps = 3/15 (20%)

Query  218  RRRKRVNTKR---SS  229
            R R RV   R   SS
Sbjct  162  RMRTRVIARRVHVSS  176


>ref|XP_002368646.1|  hypothetical protein TGME49_065170 [Toxoplasma gondii ME49]
Length=578

 GENE ID: 7900696 TGME49_065170 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   259, Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query  379  LGVFIIC-WLPFFITHILNIHCDCNIPPV--LYSAFTW  413
            LG   +C W    +  IL   C    PPV  L SA+  
Sbjct  150  LGLACVCGWAALVVLGILTLLCSTSSPPVPLLASAYGR  187


 Score = 20.2 bits (40),  Expect =  3686, Method: Compositional matrix adjust.
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query  197  SFYVPFIVTLLVYIKIYIVLR  217
            SF++    TLLV+  I  +L 
Sbjct  277  SFFIAL-ATLLVFFIINFILQ  296


 Score = 19.7 bits (39),  Expect =  4512, Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query  363  LSQQKEKKATQMLAIVLGVFIICWLPFFITH-ILNIHCDCN  402
            LSQ  +   TQ       +     L FFI   IL I   C 
Sbjct  262  LSQYADATLTQVKMRSFFIALATLLVFFIINFILQINVQCH  302


 Score = 18.0 bits (35),  Expect = 18232, Method: Compositional matrix adjust.
 Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 0/38 (0%)

Query  297  PIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKNGHAKDH  334
            P P   H     +              K EK G A +H
Sbjct  415  PLPAGPHADERTEKGEDAEEPNVGNQKKAEKEGFASNH  452


 Score = 16.3 bits (31),  Expect = 48282, Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query  45   IAVIVFGNVLVCMAVSRE  62
            IA  V G +  CM V R+
Sbjct  547  IAMHVAGTIF-CMHVTRD  563


>ref|YP_002333798.1|  putative guanine/xanthine permease [Borrelia afzelii ACA-1]
Length=451

 GENE ID: 7068312 BafACA1_B20 | putative guanine/xanthine permease
[Borrelia afzelii ACA-1]

 Score = 24.0 bits (49),  Expect =   266, Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 36/130 (27%), Gaps = 29/130 (22%)

Query  289  PPERTRYSPIPPSHHQL----TLPDPS-----------HHGLHSTPDS----PAKPEKNG  329
            P    R+  I P   QL     L +                L  T        AK     
Sbjct  228  PDGILRFESIKPIFNQLDFSYILSEHFWSFITIVLILLFNDLFDTLGTLIAVAAKGNMLD  287

Query  330  HAKDHPKIAKIFEIQTMPNGKTRTSLKTMSRRKLSQQ-----KEKKATQMLAIVLGV--F  382
                 P + KIF I       T      MS      +      E   T +  IV G+  F
Sbjct  288  KNGKIPNVGKIFLIDAIS--TTIGAIMGMSTVTAYIESCTGIEEGGKTGLTVIVTGIMFF  345

Query  383  IICWL-PFFI  391
            I   L P FI
Sbjct  346  IAIFLSPLFI  355


>ref|YP_709266.1|  hypothetical protein BAPKO_5019 [Borrelia afzelii PKo]
Length=451

 GENE ID: 4227287 BAPKO_5019 | hypothetical protein [Borrelia afzelii PKo]
(10 or fewer PubMed links)

 Score = 24.0 bits (49),  Expect =   266, Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 36/130 (27%), Gaps = 29/130 (22%)

Query  289  PPERTRYSPIPPSHHQL----TLPDPS-----------HHGLHSTPDS----PAKPEKNG  329
            P    R+  I P   QL     L +                L  T        AK     
Sbjct  228  PDGILRFESIKPIFNQLDFSYILSEHFWSFITIVLILLFNDLFDTLGTLIAVAAKGNMLD  287

Query  330  HAKDHPKIAKIFEIQTMPNGKTRTSLKTMSRRKLSQQ-----KEKKATQMLAIVLGV--F  382
                 P + KIF I       T      MS      +      E   T +  IV G+  F
Sbjct  288  KNGKIPNVGKIFLIDAIS--TTIGAIMGMSTVTAYIESCTGIEEGGKTGLTVIVTGIMFF  345

Query  383  IICWL-PFFI  391
            I   L P FI
Sbjct  346  IAIFLSPLFI  355


>ref|XP_002367166.1|  hypothetical protein TGME49_048190 [Toxoplasma gondii ME49]
Length=949

 GENE ID: 7895955 TGME49_048190 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.0 bits (49),  Expect =   269, Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 52/206 (25%), Gaps = 46/206 (22%)

Query  241  KGNCTHPEDMKLCTVIMKSNGSFP--VNRRRVEAARRAQELEMEMLSSTSPPERTRYSPI  298
            K   TH       T    S G       R R+   RR QE   +    T           
Sbjct  32   KPHSTHAAAE---TPGKDSGGELGRESERKRISGMRRQQEEGRQGGNATG----------  78

Query  299  PPSHHQLTLPDPSHHGLHSTPD--SPAKPEKNGHAKDHPKIAKIFEIQTMPNGKTRTSLK  356
                      D    G     D    A  +      +      I   Q  P    R   K
Sbjct  79   ----------DRGERGKARGGDRGEGARRDRESDGRENDGDGRILSGQPSPLFEERRTAK  128

Query  357  TMSRRKLSQQKEKKATQMLAIV-LGVFIICWLPFFITHILNIHCD-------------CN  402
               R K S  K+  AT     V LG++         T   N   D               
Sbjct  129  KEGRKKASLNKD--ATGAGSSVSLGIYFAA--AGLMTGTQNSRRDRRATHAATTSFSLSP  184

Query  403  IPPVLYS-AFTWLGYVNSAVNPIIYT  427
             PPVL S AF  L   N   +    T
Sbjct  185  EPPVLSSAAFPSLHVANQKTDRAKQT  210


>ref|XP_002369239.1|  hypothetical protein TGME49_086020 [Toxoplasma gondii ME49]
Length=230

 GENE ID: 7898154 TGME49_086020 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   271, Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 9/48 (18%)

Query  281  MEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKN  328
             E L S   P+       PPS +   LP         TP SP   EK 
Sbjct  64   QEKLASGGHPQAEPKPTDPPSPQRGSLP---------TPASPGEAEKK  102


 Score = 16.8 bits (32),  Expect = 46540, Method: Compositional matrix adjust.
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 13/36 (36%)

Query  146  YSSKRRVTVMISIVWVLSFTISCPLLFGLNNADQNE  181
            +S KR   VM    WV S           ++ D++E
Sbjct  198  FSRKRSDSVM---QWVRS----------ADDEDEDE  220


 Score = 15.5 bits (29),  Expect = 91852, Method: Compositional matrix adjust.
 Identities = 5/13 (38%), Positives = 6/13 (46%), Gaps = 0/13 (0%)

Query  87   VMPWVVYLEVVGE  99
            VM WV   +   E
Sbjct  206  VMQWVRSADDEDE  218


>ref|XP_002367030.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=343

 GENE ID: 7893962 TGME49_046220 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.0 bits (49),  Expect =   276, Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query  50  FGNVLVCMAVSR-EKALQTTTNYLIVSLAVADLLVATLVMPWVVY  93
           FG+  V        KA  TT  Y    L V   LV  L + W  +
Sbjct  37  FGDAPVTTSCPHCHKAITTTISYRHSCLGVTICLVTALLLGWYAF  81


>ref|ZP_03087240.1|  hypothetical protein Bbur8_03114 [Borrelia burgdorferi 80a]
Length=230


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   276, Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query  31   RPHYNYYATLLTLLIAVIVFGNV--LVCMAVSREK---ALQTTTNYLIVSLAVA-----D  80
            R  +++Y       I +IV G+V  L     S  K         N LI  LA+      +
Sbjct  83   RAEFDFYEKNG---IKIIVSGDVESLSGEVKSSIKDSISFSKNFNNLILNLAINYGGRNE  139

Query  81   LLVATLVMPWVVY---LEVVGEWKFSRIHCD-IFVTLDVMMCTAS-------ILNLCAIS  129
             L A  V   V     LE   E  FS    +     LD +  T          L   A S
Sbjct  140  ILRA--VKKFVSSDFDLESLNENIFSSFLDNPELPDLDLLIRTGGNIRISNFFLWRIAYS  197

Query  130  IDRYTAVAMPMLYNTRYS  147
               +  V  P  Y+TRYS
Sbjct  198  ELIFSNVLWPEYYDTRYS  215


 Score = 16.8 bits (32),  Expect = 46540, Method: Compositional matrix adjust.
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)

Query  162  LSFTISCPLLFGLNNADQNECIIANPAFVV  191
            LSF +     F   N   ++C I N  F +
Sbjct  54   LSFYV-----FSTENWKRDDCEIENLMFLI  78


>ref|XP_002371880.1|  hypothetical protein TGME49_104450 [Toxoplasma gondii ME49]
Length=228

 GENE ID: 7893869 TGME49_104450 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.0 bits (49),  Expect =   279, Method: Compositional matrix adjust.
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)

Query  167  SCPLLFGLNNAD---QNECIIANPAFVVYSS  194
              PLLFG    +   Q  C +A   + V  S
Sbjct  88   TAPLLFGISLTEMLVQLACFVATASYMVHAS  118


>ref|XP_002369460.1|  OPA3 domain-containing protein [Toxoplasma gondii ME49]
Length=352

 GENE ID: 7900041 TGME49_054050 | OPA3 domain-containing protein
[Toxoplasma gondii ME49]

 Score = 24.0 bits (49),  Expect =   279, Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query  354  SLKTMSRRKLSQQKEKKATQMLAIVLGVFII  384
            S K    RKL    E KA ++ A V G F+I
Sbjct  60   SNKAAPVRKL---NETKAIELGATVFGEFVI  87


>ref|XP_002367421.1|  hypothetical protein TGME49_051820 [Toxoplasma gondii ME49]
Length=281

 GENE ID: 7901374 TGME49_051820 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.0 bits (49),  Expect =   279, Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 36/120 (30%), Gaps = 8/120 (6%)

Query  71   YLIVSLAVADLLVATLVMPWVVYLEVV-GEW-KFSRIHCDI----FVTLDVMMCTASILN  124
            +       A+     L MP     EVV  +W KFSR   +     +   D          
Sbjct  135  FILLGRGEAEPFNYSLMMPNSLVEEVVRPDWTKFSRQTGETGNLYYAREDLEVSIQCLSF  194

Query  125  LCAISIDRYTAVAMPMLYNTRYSSKRRVTVMISIVWVLSFTIS-CPLLFGLNNADQNECI  183
              A  + R          N     KR   V    +    +T     L FGL NA    CI
Sbjct  195  HYAQPVMRCPDGTVQNALNL-EECKRKAFVDFVLICPPGYTLNEAGLVFGLYNAPKPKCI  253


>ref|XP_002364847.1|  ubiquitin carboxyl-terminal hydrolase, putative [Toxoplasma gondii 
ME49]
Length=4187

 GENE ID: 7899616 TGME49_055180 | ubiquitin carboxyl-terminal hydrolase,
putative [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   279, Method: Composition-based stats.
 Identities = 6/7 (85%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  217   RRRRKRV  223
             RRRRK V
Sbjct  3180  RRRRKKV  3186


 Score = 20.2 bits (40),  Expect =  3619, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 6/7 (85%), Gaps = 0/7 (0%)

Query  266   NRRRVEA  272
             +R RVEA
Sbjct  1928  DRKRVEA  1934


 Score = 19.3 bits (38),  Expect =  6822, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  413   WLGYVNS  419
             WL YV S
Sbjct  3446  WLSYVAS  3452


 Score = 19.3 bits (38),  Expect =  7275, Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 7/16 (43%)

Query  292  RTRYSPI-------PP  300
            R R SPI       PP
Sbjct  120  RSRHSPICSVVFTSPP  135


 Score = 18.5 bits (36),  Expect = 12058, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  119   TASILN  124
             TA ILN
Sbjct  3336  TAAILN  3341


 Score = 18.0 bits (35),  Expect = 17254, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 1/13 (7%)

Query  314   GLHSTP-DSPAKP  325
             GL S P DS   P
Sbjct  1818  GLNSSPADSSTSP  1830


 Score = 18.0 bits (35),  Expect = 18065, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  285   SSTSP  289
             SSTSP
Sbjct  1826  SSTSP  1830


 Score = 18.0 bits (35),  Expect = 18742, Method: Composition-based stats.
 Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  78    VADLL  82
             VADLL
Sbjct  1028  VADLL  1032


 Score = 17.2 bits (33),  Expect = 27567, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  59    VSREKA  64
             V REKA
Sbjct  3924  VRREKA  3929


 Score = 17.2 bits (33),  Expect = 33433, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 0/10 (0%)

Query  15    RQNWSRPFNG  24
             R  WS P NG
Sbjct  1700  RPRWSAPLNG  1709


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  286   STSPPE  291
             STS PE
Sbjct  1210  STSRPE  1215


 Score = 16.8 bits (32),  Expect = 39085, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  279   LEMEM  283
             LE EM
Sbjct  3890  LEVEM  3894


 Score = 16.8 bits (32),  Expect = 44044, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  288   SPPERTRY  295
             SPP R  Y
Sbjct  3716  SPPNRSVY  3723


 Score = 16.3 bits (31),  Expect = 54909, Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 7/16 (43%), Gaps = 6/16 (37%)

Query  267   RR------RVEAARRA  276
             RR      RV A  RA
Sbjct  2215  RRATPEAERVGATSRA  2230


 Score = 16.3 bits (31),  Expect = 55416, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  75    SLAVAD  80
             SLAV D
Sbjct  2141  SLAVDD  2146


 Score = 15.9 bits (30),  Expect = 73002, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  267   RRRVEAAR  274
             RR  EA R
Sbjct  2015  RRKREAER  2022


 Score = 15.5 bits (29),  Expect = 93555, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  61    REKA  64
             REKA
Sbjct  3347  REKA  3350


 Score = 15.5 bits (29),  Expect = 95290, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  361   RKLSQ  365
             RKL Q
Sbjct  3131  RKLPQ  3135


>ref|XP_002367533.1|  hypothetical protein TGME49_002480 [Toxoplasma gondii ME49]
Length=313

 GENE ID: 7894378 TGME49_002480 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.0 bits (49),  Expect =   284, Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 14/68 (20%)

Query  169  PLLFGLNNADQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRS  228
            P   G N  ++  C+    A V  S    F VP          I       R R   KR 
Sbjct  111  PFSPGENSSEEAACV----AGVGESG--GFAVP--------EPIQAPSQTHRPRGRGKRA  156

Query  229  SRAFRAHL  236
            SR  R   
Sbjct  157  SRSLRGRI  164


>ref|XP_002365783.1|  hypothetical protein TGME49_071170 [Toxoplasma gondii ME49]
Length=105

 GENE ID: 7895331 TGME49_071170 | hypothetical protein [Toxoplasma gondii ME49]

 Score = 24.0 bits (49),  Expect =   287, Method: Composition-based stats.
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)

Query  41  LTL-LIAVIVFGNV  53
           LTL L  VIV+ NV
Sbjct  84  LTLPLFGVIVYDNV  97


>ref|ZP_03539458.1|  tRNA-dihydrouridine synthase A [Borrelia garinii PBr]
Length=335


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   295, Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query  209  YIKIYIVLRRRRKRVNTKRSSRAFRAHLRAPLKGNCTHPEDMKLCTVIMKSNGSFP  264
            Y  I I        +  K   R FR  L AP       P ++K   + +K     P
Sbjct  278  YLSINILFKHLMGIIFSKEGARKFRQNLTAPF------PKNLKKHEILLKAMETLP  327


 Score = 15.5 bits (29),  Expect = 99770, Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query  39  TLLTLLIAV--IVFGNVL-VCMAVSREK--ALQTTTNYLIVSLAVADLL  82
           TL T +I    I+ G+V  V      E   A Q  TN     L     L
Sbjct  32  TLYTPMISAKSIIMGDVKKVVKQTPLESPIAIQIATNCKFDALKAIQIL  80


>ref|XP_002366001.1|  hypothetical protein TGME49_074000 [Toxoplasma gondii ME49]
Length=3814

 GENE ID: 7895008 TGME49_074000 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   295, Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 8/24 (33%)

Query  218   RRRKRVNTKRSSRAFRAHL-RAPL  240
             RRRK  +T      FRA+L RA L
Sbjct  1004  RRRK-GDT------FRAQLHRARL  1020


 Score = 21.0 bits (42),  Expect =  1868, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 7/8 (87%), Gaps = 0/8 (0%)

Query  73    IVSLAVAD  80
             IV LAVA+
Sbjct  3397  IVALAVAN  3404


 Score = 19.3 bits (38),  Expect =  6759, Method: Composition-based stats.
 Identities = 7/11 (63%), Positives = 7/11 (63%), Gaps = 0/11 (0%)

Query  267  RRRVEAARRAQ  277
            R R EAA R Q
Sbjct  879  RKREEAASRLQ  889


 Score = 18.0 bits (35),  Expect = 17096, Method: Composition-based stats.
 Identities = 6/10 (60%), Positives = 6/10 (60%), Gaps = 2/10 (20%)

Query  268   RRVEA--ARR  275
             RRVE    RR
Sbjct  2314  RRVEERQTRR  2323


 Score = 17.2 bits (33),  Expect = 34368, Method: Composition-based stats.
 Identities = 5/6 (83%), Positives = 5/6 (83%), Gaps = 0/6 (0%)

Query  38   ATLLTL  43
            A LLTL
Sbjct  577  AALLTL  582


 Score = 16.8 bits (32),  Expect = 36315, Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 7/13 (53%), Gaps = 2/13 (15%)

Query  352   RTSLKTMSR--RK  362
             R SL T  R  RK
Sbjct  2572  RSSLRTAWRGWRK  2584


 Score = 16.8 bits (32),  Expect = 37330, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  216   LRRR  219
             LRRR
Sbjct  2832  LRRR  2835


 Score = 16.8 bits (32),  Expect = 42846, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 6/9 (66%), Gaps = 1/9 (11%)

Query  265   VNRRRV-EA  272
             V RRR  EA
Sbjct  2150  VERRRALEA  2158


 Score = 16.8 bits (32),  Expect = 43242, Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 7/23 (30%)

Query  13    LERQNWSRPFNG----SDGKADR  31
             L+R  W R   G    S  KA+R
Sbjct  2212  LQRLQWER---GVIEVSQAKANR  2231


 Score = 16.8 bits (32),  Expect = 46114, Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 8/21 (38%)

Query  267   RRR-VEAAR-----R--AQEL  279
             RRR V AA      R  A EL
Sbjct  3341  RRRAVGAAKEPLGTRDEAKEL  3361


 Score = 16.3 bits (31),  Expect = 48282, Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 10/27 (37%), Gaps = 11/27 (40%)

Query  270   VEAARRAQELEMEMLSSTS--PPERTR  294
             VE AR         LS  S    ER R
Sbjct  3271  VESAR---------LSTASLDAGERDR  3288


 Score = 16.3 bits (31),  Expect = 56964, Method: Composition-based stats.
 Identities = 4/4 (100%), Positives = 4/4 (100%), Gaps = 0/4 (0%)

Query  215  VLRR  218
            VLRR
Sbjct  950  VLRR  953


 Score = 16.3 bits (31),  Expect = 59642, Method: Composition-based stats.
 Identities = 4/6 (66%), Positives = 4/6 (66%), Gaps = 0/6 (0%)

Query  216   LRRRRK  221
             L RRR 
Sbjct  1091  LWRRRR  1096


 Score = 15.9 bits (30),  Expect = 65382, Method: Composition-based stats.
 Identities = 5/8 (62%), Positives = 5/8 (62%), Gaps = 0/8 (0%)

Query  282   EMLSSTSP  289
             EM S T P
Sbjct  2854  EMRSTTGP  2861


 Score = 15.9 bits (30),  Expect = 65985, Method: Composition-based stats.
 Identities = 5/7 (71%), Positives = 5/7 (71%), Gaps = 0/7 (0%)

Query  171   LFGLNNA  177
             LF L NA
Sbjct  2539  LFVLSNA  2545


>ref|XP_002370230.1|  hypothetical protein, conserved [Toxoplasma gondii ME49]
Length=1648

 GENE ID: 7900249 TGME49_094610 | hypothetical protein [Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   297, Method: Composition-based stats.
 Identities = 8/10 (80%), Positives = 8/10 (80%), Gaps = 1/10 (10%)

Query  219  RRKRV-NTKR  227
            RRKRV  TKR
Sbjct  546  RRKRVMATKR  555


 Score = 20.6 bits (41),  Expect =  2957, Method: Composition-based stats.
 Identities = 6/8 (75%), Positives = 6/8 (75%), Gaps = 0/8 (0%)

Query  317  STPDSPAK  324
            S PD PAK
Sbjct  255  SVPDTPAK  262


 Score = 18.0 bits (35),  Expect = 16329, Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 1/12 (8%)

Query  267   RRRVEAAR-RAQ  277
             R R E AR RA+
Sbjct  1047  RQREEEARLRAE  1058


 Score = 17.2 bits (33),  Expect = 28863, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 5/5 (100%), Gaps = 0/5 (0%)

Query  300  PSHHQ  304
            PSH+Q
Sbjct  103  PSHQQ  107


 Score = 16.8 bits (32),  Expect = 46114, Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 7/9 (77%), Gaps = 1/9 (11%)

Query  58    AVSREKALQ  66
             AV RE AL+
Sbjct  1437  AV-REMALH  1444


 Score = 16.3 bits (31),  Expect = 48727, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  36    YYATL  40
             YY TL
Sbjct  1027  YYETL  1031


 Score = 15.9 bits (30),  Expect = 80766, Method: Composition-based stats.
 Identities = 4/5 (80%), Positives = 4/5 (80%), Gaps = 0/5 (0%)

Query  93   YLEVV  97
            Y EVV
Sbjct  166  YVEVV  170


>ref|XP_002369580.1|  DnaJ domain-containing protein [Toxoplasma gondii ME49]
Length=1519

 GENE ID: 7896269 TGME49_007760 | DnaJ domain-containing protein
[Toxoplasma gondii ME49]


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score = 24.0 bits (49),  Expect =   297, Method: Composition-based stats.
 Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 1/13 (7%)

Query  221  KRVNTKRSSRAFR  233
             RV   RS RAFR
Sbjct  362  RRVASNRS-RAFR  373


 Score = 19.7 bits (39),  Expect =  5178, Method: Composition-based stats.
 Identities = 5/6 (83%), Posit0