Your search is limited to records matching entrez query: CR1 OR APOE4 AND txid9606 [ORGN].

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Formatting options
Show	as Advanced View Use old BLAST report format Reset form to defaults [?] These options control formatting of alignments in results pages. The default is HTML, but other formats (including plain text) are available. PSSM and PssmWithParameters are representations of Position Specific Scoring Matrices and are only available for PSI-BLAST. The Advanced view option allows the database descriptions to be sorted by various indices in a table. more...
Alignment View	[?] Choose how to view alignments. The default "pairwise" view shows how each subject sequence aligns individually to the query sequence. The "query-anchored" view shows how all subject sequences align to the query sequence. For each view type, you can choose to show "identities" (matching residues) as letters or dots. more...
Display	Graphical Overview Linkout Sequence Retrieval NCBI-gi CDS feature [?] Graphical Overview: Graphical Overview: Show graph of similar sequence regions aligned to query. more... Database LinkOuts: Show links from matching sequences to entries in specialized NCBI databases. more... Sequence Retrieval: Show buttons to download matching sequences. more... NCBI-gi: Show NCBI gi identifiers. more... CDS feature: Show annotated coding region and translation. more...
Masking	Character: Color: [?] Masking Character: Display masked (filtered) sequence regions as lower-case or as specific letters (N for nucleotide, P for protein). Masking Color: Display masked sequence regions in the given color.
Limit results	Descriptions: Graphical overview: Alignments: [?] Descriptions: Show short descriptions for up to the given number of sequences. Alignments: Show alignments for up to the given number of sequences, in order of statistical significance.
	Organism Type common name, binomial, taxid, or group name. Only 20 top taxa will be shown. [?] Show only sequences from the given organism.
	Entrez query: [?] Show only those sequences that match the given Entrez query. more...
	Expect Min: Expect Max: [?] Show only sequences with expect values in the given range. more...
Format for	PSI-BLAST with inclusion threshold: [?] Format for PSI-BLAST: The Position-Specific Iterated BLAST (PSI-BLAST) program performs iterative searches with a protein query, in which sequences found in one round of search are used to build a custom score model for the next round. more... Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used by PSI-BLAST to create the PSSM on the next iteration.

cryptochr13

Query ID: gi|58271750|ref|NC_006682.1|; gi|58271750|ref|NC_006682.1|
Description: Cryptococcus neoformans var. neoformans JEC21 chromosome 13, complete sequence
Molecule type: dna
Query Length: 787999

Database Name: nr
Description: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects See details
Program: BLASTX 2.2.24+ Citation

Other reports: Search Summary

Search Parameters
Search parameter name	Search parameter value
Program	blastx
Word size	3
Expect value	1e+06
Hitlist size	20000
Gapcosts	9,1
Matrix	PAM30
Low Complexity Filter	Yes
Filter string	L;
Genetic Code	1
Window Size	40
Threshold	12

Database
Database parameter name	Database parameter value
Posted date	Jul 31, 2010 5:43 PM
Number of letters	3,959,748,300
Number of sequences	11,587,144
Entrez query	CR1 OR APOE4 AND txid9606 [ORGN]

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.340025	0.294
K	0.282849	0.11
H	1.75357	0.61

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	27
Effective length of query	787972
Effective length of database	31328
Effective search space	8227954592
Effective search space used	8227954592

Graphic Summary

Distribution of 249037 Blast Hits on the Query Sequence [?]

score 18